Co-expression analysis

Gene ID	Gma.11284.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g35960: NHL12 (HF=2e-4)
Module size	9 genes
NF	0.19
%ile	42.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	0.97	Gma.11284.1.S1_at	AW153035	-	-	2e-4	At2g35960	NHL12	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.93189.1.S1_s_at	CF808914	-	-	2e-67	At5g64370	BETA-UP (beta-ureidopropionase)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	GmaAffx.87604.1.S1_at	AW596527	-	-	9e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	GmaAffx.84862.1.S1_at	AI965964	-	-	1e-29	At5g61240	protein binding	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	GmaAffx.93138.1.S1_s_at	CF808863	-	-	2e-27	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	GmaAffx.91636.1.S1_s_at	CF807361	-	-	3e-63	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.98	Gma.5244.3.S1_a_at	BM893397	-	-	1e-32	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.99	Gma.5720.2.S1_a_at	BG652626	-	-	2e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.98	GmaAffx.85336.1.S1_at	BG047448	-	-	5e-18	At1g69510	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1608560_at, orthologous to the query gene, Gma.11284.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.5	1608560_at	At2g35960	hypothetical protein LOC100250989	-	3e+0	At3g09890	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1620176_at	At2g35960	hypothetical protein LOC100264829	-	2e-3	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1607835_at	At2g35960	similar to transducin family protein / WD-40 repeat family protein	-	1e+0	At3g49750	AtRLP44 (Receptor Like Protein 44)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1614150_at	At2g35960	-	-	1e+0	At2g28630	KCS12 (3-KETOACYL-COA SYNTHASE 12)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1613000_at	At2g35960	-	-	4e+0	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.06	6.8	1607279_at	At2g35960	hypothetical protein LOC100242386	-	4e-1	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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