Co-expression analysis

Gene ID Gma.11273.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At5g54960: PDC2 (pyruvate decarboxylase-2) (HF=2e-66)
Module size 47 genes
NF 0.11
%ile 29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.98100.00.90Gma.11273.1.S1_s_atCD396662--2e-66At5g54960PDC2 (pyruvate decarboxylase-2)O.I.H.G.S.X.
0.3142.20.94Gma.7310.1.S1_atBQ630696--3e-18At4g33070pyruvate decarboxylase, putativeO.I.H.G.S.X.
0.2430.90.94Gma.4097.1.S1_atAW350249--2e-45At1g77120ADH1 (ALCOHOL DEHYDROGENASE 1)O.I.H.G.S.X.
0.2025.10.97Gma.574.1.S1_x_atAW310169--5e-6At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.H.G.S.X.
0.1923.70.94GmaAffx.56285.1.S1_atBE659649--2e-5At4g30850HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)O.I.H.G.S.X.
0.1923.70.95GmaAffx.13138.1.S1_atBF596324--3e-10At3g28480oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.1923.70.94GmaAffx.65627.1.S1_atBM085372--4e-1At1g56530hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1721.20.93Gma.7310.1.S1_s_atBQ630696--3e-18At4g33070pyruvate decarboxylase, putativeO.I.H.G.S.X.
0.1619.70.95Gma.12597.1.A1_atCD392082--7e-1At1g74620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1619.70.96Gma.574.1.S1_atAW310169--5e-6At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.H.G.S.X.
0.1619.70.97Gma.574.2.S1_atCD486754--4e-136At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.H.G.S.X.
0.1619.70.96GmaAffx.90654.1.S1_s_atCF806379--5e-33At2g01970endomembrane protein 70, putativeO.I.H.G.S.X.
0.1417.50.98GmaAffx.60847.1.A1_atBU550307--7e-15At5g38630ACYB-1O.I.H.G.S.X.
0.1417.50.95Gma.5851.1.S1_atAF456323.1--2e-31At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.1316.30.96GmaAffx.59358.1.S1_atAW460017--4e-15At3g03250UGP (UDP-glucose pyrophosphorylase)O.I.H.G.S.X.
0.1316.30.97Gma.16114.1.S1_atBE821099--4e-22At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.1215.10.97GmaAffx.22484.1.A1_atBU546399--5e+0At5g38380-O.I.H.G.S.X.
0.1215.10.98Gma.2425.1.A1_s_atBI969464--7e-2At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.1215.10.96GmaAffx.89985.1.S1_s_atCF805710--4e-3At4g15790unknown proteinO.I.H.G.S.X.
0.1114.20.97GmaAffx.70933.2.S1_atAW156633--3e-41At2g38730peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.
0.1114.20.96Gma.4032.3.S1_s_atBQ253787--6e-116At4g24620PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)O.I.H.G.S.X.
0.1114.20.95Gma.13801.1.A1_atCD405909--1e-4At1g12760protein binding / ubiquitin-protein ligase/ zinc ion bindingO.I.H.G.S.X.
0.1114.20.97Gma.3964.1.S1_a_atCD487753--2e-2At5g63220unknown proteinO.I.H.G.S.X.
0.1013.00.97Gma.5194.1.S1_atBG507812--4e-2At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.1013.00.97GmaAffx.88847.1.S1_s_atCK605836--5e-74At3g22110PAC1O.I.H.G.S.X.
0.1013.00.97Gma.12953.1.A1_atCD397030--2e-32At5g56130transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1013.00.96Gma.1015.1.S1_atBI970354--5e-23At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.1013.00.97GmaAffx.45872.1.S1_atBM095149--2e-23At4g29220PFK1 (PHOSPHOFRUCTOKINASE 1)O.I.H.G.S.X.
0.1013.00.96Gma.6298.1.S1_atBM309168--9e-123At1g23490ATARF1 (ADP-RIBOSYLATION FACTOR 1)O.I.H.G.S.X.
0.0912.00.97Gma.6263.1.S1_atAW311303--2e-112At1g79550PGK (PHOSPHOGLYCERATE KINASE)O.I.H.G.S.X.
0.0912.00.95Gma.2478.1.S1_atCF921737--8e-18At5g48580FKBP15-2O.I.H.G.S.X.
0.0811.00.96GmaAffx.14408.1.S1_atAW597887--1e+0At5g05530zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.0811.00.98GmaAffx.82169.1.S1_atBQ252939--1e-3At4g01710CRK (CROOKED)O.I.H.G.S.X.
0.0811.00.96Gma.409.1.A1_atCD414565--9e-5At4g32570TIFY8 (TIFY DOMAIN PROTEIN 8)O.I.H.G.S.X.
0.0811.00.97Gma.4032.3.S1_atBQ253787--6e-116At4g24620PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)O.I.H.G.S.X.
0.0811.00.96Gma.13938.1.S1_atBM086170--6e-17At4g26900AT-HF (HIS HF)O.I.H.G.S.X.
0.0710.20.98Gma.4032.3.S1_x_atBQ253787--6e-116At4g24620PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)O.I.H.G.S.X.
0.0710.20.97Gma.6014.1.S1_atBE821831--8e-111At1g53850PAE1O.I.H.G.S.X.
0.0710.20.97Gma.7479.1.A1_atBF067052--4e-10At5g04740ACT domain-containing proteinO.I.H.G.S.X.
0.0710.20.98Gma.8498.1.S1_atAF329816.1Cu/Zn-superoxide dismutase copper chaperone precursor-1e-14At1g12520ATCCS (COPPER CHAPERONE FOR SOD1)O.I.H.G.S.X.
0.069.00.95Gma.10814.1.S1_atCD402301--3e-8At3g14750unknown proteinO.I.H.G.S.X.
0.069.00.96GmaAffx.8733.2.S1_atBF596021--3e-13At3g03010aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.069.00.98Gma.2440.1.S1_atAW309684--8e-15At5g61240protein bindingO.I.H.G.S.X.
0.069.00.95Gma.17525.1.S1_s_atBG839191heat shock protein 90-1-0At5g56000heat shock protein 81-4 (HSP81-4)O.I.H.G.S.X.
0.058.00.97GmaAffx.87181.1.S1_atBI892597--8e-41At1g10290ADL6 (DYNAMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.058.00.96GmaAffx.66529.1.S1_atBI498168--1e+0At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.047.00.96Gma.10565.1.A1_atCD400873--1e+0At4g26470calcium ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.997.1GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.997.1GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.796.8GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.496.4GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.296.0GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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