Co-expression analysis

Gene ID	Gma.11254.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g45040: cytochrome c6 (ATC6) (HF=9e+0)
Module size	6 genes
NF	0.71
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.97	Gma.11254.1.S1_a_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.96	GmaAffx.39605.1.S1_at	BM178864	-	-	2e+0	At2g41470	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.97	Gma.11254.1.S1_x_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.96	Gma.11367.1.S1_at	AW598213	-	-	8e-3	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.96	GmaAffx.1301.88.S1_s_at	BG041563	-	-	4e-12	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	Gma.11254.3.S1_a_at	BF069978	-	-	4e+0	At4g13790	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.7	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.4	97.6	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.0	97.2	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.8	97.0	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.8	97.0	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.5	96.6	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.4	96.4	GSM244834	23_CON.M2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.4	96.4	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM236910	Soybean_nonapicalmeristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.2	96.0	GSM244876	32_SLO.M2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.0	95.6	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.0	95.6	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage