Co-expression analysis

Gene ID Gma.11238.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g60600: HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) (HF=3e-121)
Module size 6 genes
NF 0.74
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.98Gma.11238.1.S1_atBQ454110--3e-121At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.
0.8091.50.97GmaAffx.77778.1.S1_atAW185540--5e+0At5g52480-O.I.H.G.S.X.
0.7790.30.97Gma.11238.1.S1_a_atBQ454110--3e-121At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.
0.5778.80.97Gma.4927.1.S1_atBG510284--7e-3At4g15236ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.5071.70.98Gma.10455.1.S1_atBQ628953--3e-8At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)O.I.H.G.S.X.
0.5071.70.98GmaAffx.90026.1.S1_s_atCF805751--5e-18At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.496.4GSM29380245_3067.2D.R9D3L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29340890_C079.1Q.R9Q2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29388738_2229.2E.R022L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29427226_2427.2I.R297L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29322615_C065.1P.R9P2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM2449093_VP9.I3L2.CEL, Experimental replicate 2GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
3.095.6GSM29380043_2177.2D.R141L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.10841.1.A1_at, orthologous to the query gene, Gma.11238.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9399.3Zm.10841.1.A1_atAt5g60600hydroxymethylbutenyl 4-diphosphate synthase-2e-64At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.
0.4961.9Zm.13627.1.A1_atAt5g60600hypothetical protein LOC100275707-3e-1At2g22200AP2 domain-containing transcription factorO.I.H.G.S.X.
0.4861.3Zm.423.1.S1_atAt5g60600starch synthase isoform zSTSII-2-3e-7At3g01180AtSS2 (starch synthase 2)O.I.H.G.S.X.
0.4759.9Zm.4616.2.A1_atAt5g60600Hypothetical protein LOC100193318-9e-1At3g25980mitotic spindle checkpoint protein, putative (MAD2)O.I.H.G.S.X.
0.4352.8Zm.9097.1.A1_atAt5g60600--1e+0At2g17640ATSERAT3O.I.H.G.S.X.
0.4251.3Zm.13034.1.S1_atAt5g60600--8e-7At2g12400unknown proteinO.I.H.G.S.X.
0.4149.7Zm.9389.2.A1_x_atAt5g60600catalytic/ protein phosphatase type 2C-1e+0Atmg00980-O.I.H.G.S.X.
0.4149.7Zm.13198.1.A1_x_atAt5g60600--1e-1At3g52270ATP binding / RNA polymerase II transcription factorO.I.H.G.S.X.
0.4149.7Zm.2667.1.A1_atAt5g60600signal transducer-3e-2At3g44750HDA3 (HISTONE DEACETYLASE 3)O.I.H.G.S.X.
0.4048.5Zm.14051.1.S1_atAt5g60600hypothetical protein LOC100217091-5e-1At5g38650proteasome maturation factor UMP1 family proteinO.I.H.G.S.X.
0.3945.6Zm.17629.1.A1_atAt5g60600--2e-6At5g64550loricrin-relatedO.I.H.G.S.X.
0.3844.2Zm.13198.2.A1_atAt5g60600--4e+0At3g43432unknown proteinO.I.H.G.S.X.
0.3641.3Zm.5759.1.A1_atAt5g60600--5e+0At5g23405high mobility group (HMG1/2) family proteinO.I.H.G.S.X.
0.3538.9Zm.11837.1.A1_atAt5g60600hypothetical protein LOC100275424-1e+0At4g16380metal ion bindingO.I.H.G.S.X.
0.3437.2Zm.561.1.A1_atAt5g60600glutathione transferase23-5e-1At3g43800ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)O.I.H.G.S.X.
0.3437.2Zm.14469.1.A1_atAt5g60600anthranilate synthase alpha-6e-18At2g29690ASA2 (ANTHRANILATE SYNTHASE 2)O.I.H.G.S.X.
0.3437.2Zm.18140.1.S1_atAt5g60600--4e-1At4g36950MAPKKK21O.I.H.G.S.X.
0.3336.0Zm.3786.1.S1_atAt5g60600hypothetical protein LOC100273838-3e-3At5g54680ILR3 (iaa-leucine resistant3)O.I.H.G.S.X.
0.3233.4Zm.143.3.S1_a_atAt5g60600--3e+0At3g12545lipid transfer protein-relatedO.I.H.G.S.X.
0.3131.6Zm.2652.1.A1_atAt5g60600--1e+1At5g18020auxin-responsive protein, putativeO.I.H.G.S.X.
0.3029.8Zm.12547.1.A1_atAt5g60600RNA binding protein-1e-3At4g03110RNA-binding protein, putativeO.I.H.G.S.X.
0.2828.1Zm.5912.1.S1_atAt5g60600hypothetical protein LOC100191374-2e+0At3g24508-O.I.H.G.S.X.
0.2724.6Zm.888.1.S1_atAt5g60600hypothetical protein LOC100216750-1e-7At1g08880H2AXAO.I.H.G.S.X.
0.2318.6Zm.16513.1.A1_atAt5g60600hypothetical protein LOC100273404-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2216.9Zm.3044.1.S1_atAt5g60600--2e-10At1g27900RNA helicase, putativeO.I.H.G.S.X.
0.2216.9Zm.3251.1.A1_atAt5g60600hypothetical protein LOC100280262-2e-3At3g13180NOL1/NOP2/sun family protein / antitermination NusB domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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