CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.11238.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g60600: HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) (HF=3e-121)

Module size 6 genes

NF 0.74

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.98 Gma.11238.1.S1_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.80 91.5 0.97 GmaAffx.77778.1.S1_at AW185540 - - 5e+0 At5g52480 - O.I. H.G. S.X.
0.77 90.3 0.97 Gma.11238.1.S1_a_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.57 78.8 0.97 Gma.4927.1.S1_at BG510284 - - 7e-3 At4g15236 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.50 71.7 0.98 Gma.10455.1.S1_at BQ628953 - - 3e-8 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.50 71.7 0.98 GmaAffx.90026.1.S1_s_at CF805751 - - 5e-18 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 96.4 GSM293802 45_3067.2D.R9D3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM293408 90_C079.1Q.R9Q2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293887 38_2229.2E.R022L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM294272 26_2427.2I.R297L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293226 15_C065.1P.R9P2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM244909 3_VP9.I3L2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.0 95.6 GSM293800 43_2177.2D.R141L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2213.1.S1_at, orthologous to the query gene, Gma.11238.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 Ptp.2213.1.S1_at At5g60600 hypothetical protein - 5e-45 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.80 96.0 PtpAffx.133840.1.A1_at At5g60600 hypothetical protein - 2e-3 At3g58720 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.67 91.1 PtpAffx.210975.1.S1_x_at At5g60600 hypothetical protein - 5e-6 At3g04890 unknown protein O.I. H.G. S.X.
0.50 78.6 PtpAffx.3147.2.A1_at At5g60600 - - 5e-1 At1g62935 unknown protein O.I. H.G. S.X.
0.46 73.7 Ptp.7921.1.S1_s_at At5g60600 hypothetical protein - 2e-37 At4g37550 formamidase, putative / formamide amidohydrolase, putative O.I. H.G. S.X.
0.30 52.0 PtpAffx.152352.1.S1_s_at At5g60600 hypothetical protein - 9e-49 At4g37550 formamidase, putative / formamide amidohydrolase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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