CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.11238.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g60600: HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) (HF=3e-121)

Module size 6 genes

NF 0.74

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.98 Gma.11238.1.S1_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.80 91.5 0.97 GmaAffx.77778.1.S1_at AW185540 - - 5e+0 At5g52480 - O.I. H.G. S.X.
0.77 90.3 0.97 Gma.11238.1.S1_a_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.57 78.8 0.97 Gma.4927.1.S1_at BG510284 - - 7e-3 At4g15236 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.50 71.7 0.98 Gma.10455.1.S1_at BQ628953 - - 3e-8 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.50 71.7 0.98 GmaAffx.90026.1.S1_s_at CF805751 - - 5e-18 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 96.4 GSM293802 45_3067.2D.R9D3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM293408 90_C079.1Q.R9Q2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293887 38_2229.2E.R022L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM294272 26_2427.2I.R297L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293226 15_C065.1P.R9P2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM244909 3_VP9.I3L2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.0 95.6 GSM293800 43_2177.2D.R141L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the rice gene, Os02g0603800, orthologous to the query gene, Gma.11238.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os02g0603800 At5g60600 - Isoprenoid biosynthesis-like protein (Fragment) 6e-86 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.83 95.8 Os01g0830000 At5g60600 - SufB 7e-5 At4g04770 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) O.I. H.G. S.X.
0.67 87.2 Os03g0731900 At5g60600 - Isopentenyl/dimethylallyl diphosphate synthase(Fragment) 8e-23 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.33 38.8 Os02g0649700 At5g60600 - Peptidase M41, FtsH extracellular domaincontaining protein 6e-34 At3g47060 ftsh7 (FtsH protease 7) O.I. H.G. S.X.
0.30 32.7 Os03g0583800 At5g60600 - Mpv17/PMP22 family protein 1e-8 At1g52870 peroxisomal membrane protein-related O.I. H.G. S.X.
0.27 27.5 Os01g0711400 At5g60600 - Victorin binding protein 3e-75 At4g33010 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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