Co-expression analysis

Gene ID Gma.11190.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g31610: 40S ribosomal protein S3 (RPS3A) (HF=7e-65)
Module size 6 genes
NF 0.48
%ile 78.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.10.98Gma.11190.1.S1_atCD402535--7e-65At2g3161040S ribosomal protein S3 (RPS3A)O.I.H.G.S.X.
0.6786.10.98Gma.11190.2.S1_atBM270192--1e-81At2g3161040S ribosomal protein S3 (RPS3A)O.I.H.G.S.X.
0.4057.10.98Gma.17803.1.S1_s_atCD418023--1e-21At2g23930SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)O.I.H.G.S.X.
0.4057.10.98GmaAffx.90058.1.S1_s_atCF805783--1e-9At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.
0.3142.20.98Gma.4814.1.S1_s_atBE657319--9e-46At5g16070chaperonin, putativeO.I.H.G.S.X.
0.2532.60.98GmaAffx.89272.1.A1_s_atCK606408--1e-34At5g2785060S ribosomal protein L18 (RPL18C)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.698.3GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
5.598.3GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
5.398.2GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
5.098.0GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.097.2GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.997.1GSM258496Vegetative soybean shoot apical meristemGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.696.7GSM258499Soybean shoot apical meristem, 4 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.496.4GSM258501Soybean shoot apical meristem, 1 short-day treatment replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.396.2GSM258498Soybean shoot apical meristem, 2 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.296.0GSM258497Soybean Shoot Apical Meristem, 1 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.296.0GSM29404897_2249.2F.R268L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM309557storage protein suppression expt, RNAi biol rep1, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.095.6GSM309529storage protein suppression expt, RNAi biol rep1, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.095.6GSM309528storage protein suppression expt, control tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.095.6GSM309530storage protein suppression expt, RNAi biol rep2, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.095.6GSM258504Soybean shoot apical meristem, 4 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.095.6GSM309531storage protein suppression expt, RNAi biol rep2, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage