Co-expression analysis

Gene ID	Gma.11120.1.S1_at
Gene name	alternative oxidase 2b
Homology with Arabidopsis	Similar to At3g22370: AOX1A (ALTERNATIVE OXIDASE 1A) (HF=3e-6)
Module size	6 genes
NF	0.51
%ile	81.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.97	Gma.11120.1.S1_at	U87907.1	alternative oxidase 2b	-	3e-6	At3g22370	AOX1A (ALTERNATIVE OXIDASE 1A)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.97	GmaAffx.86361.1.S1_s_at	BG508205	alternative oxidase 2b	-	4e-9	At3g27620	AOX1C	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	GmaAffx.91355.1.S1_s_at	CF807080	alternative oxidase 2b	-	7e-5	At5g64210	AOX2	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.97	Gma.2143.1.S1_at	BE659691	-	-	2e-60	At1g77810	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.1824.1.S1_at	BI469795	-	-	7e-16	At5g26030	FC1 (ferrochelatase 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	GmaAffx.12058.1.S1_s_at	AW597990	-	-	9e-54	At3g11320	organic anion transmembrane transporter	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.5	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.0	97.2	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage