Co-expression analysis

Gene ID Gma.1106.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g53330: - (HF=1e-1)
Module size 8 genes
NF 0.42
%ile 72.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7890.60.98Gma.1106.1.S1_atCD416163--1e-1At5g53330-O.I.H.G.S.X.
0.6382.90.97Gma.2722.1.S1_atAI856313--5e-6At1g27760interferon-related developmental regulator family protein / IFRD protein familyO.I.H.G.S.X.
0.4766.60.98Gma.11164.1.S1_atAW350722Peroxisomal 3-ketoacyl-CoA thiolase precursor-1e-85At1g04710PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4)O.I.H.G.S.X.
0.3650.80.98Gma.4178.1.S1_s_atBQ299028--8e-12At5g13190-O.I.H.G.S.X.
0.3243.70.98GmaAffx.93378.1.S1_s_atCF809103--3e-1At1g02130ARA-5 (ARABIDOPSIS RAS 5)O.I.H.G.S.X.
0.2735.70.98GmaAffx.90399.1.S1_s_atCF806124--4e-13At1g14260zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2735.70.98GmaAffx.86574.1.S1_atBG839482--7e-12At4g13980AT-HSFA5O.I.H.G.S.X.
0.2228.10.98GmaAffx.93379.1.S1_s_atCF809104--2e-24At1g49670NQRO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.195.8GSM29319779_C053.1O.R9O3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29404796_3095.2F.R9F1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM2940075_3095.2F.R9F1U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29311328_C047.1O.R9O2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage