Co-expression analysis

Gene ID Gma.10964.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g07810: ECA1 (ER-TYPE CA2+-ATPASE 1) (HF=8e-13)
Module size 35 genes
NF 0.29
%ile 55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.80.95Gma.10964.1.S1_atAW277625--8e-13At1g07810ECA1 (ER-TYPE CA2+-ATPASE 1)O.I.H.G.S.X.
0.4766.60.96Gma.5974.1.S1_atCA802351--1e+0At4g12190zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4766.60.95Gma.7449.1.A1_atBU547792--4e+0At5g55460protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4360.60.97GmaAffx.86308.1.S1_atAW394811--6e-4At1g79730ELF7 (EARLY FLOWERING 7)O.I.H.G.S.X.
0.4057.10.97GmaAffx.39226.1.S1_atAW350233--3e-20At2g30110ATUBA1O.I.H.G.S.X.
0.4057.10.96Gma.2561.1.S1_atBU545823bZIP transcription factor bZIP56-4e-9At1g24267unknown proteinO.I.H.G.S.X.
0.3954.50.97Gma.4895.1.S1_atBI969634--1e+0At1g05010EFE (ETHYLENE-FORMING ENZYME)O.I.H.G.S.X.
0.3346.10.97Gma.7762.1.A1_atBE821610--1e+0At3g57850-O.I.H.G.S.X.
0.3346.10.96Gma.4885.1.S1_atBE820599--1e-22At3g05100-O.I.H.G.S.X.
0.3346.10.97GmaAffx.37258.1.S1_atAW156257--3e-22At5g38830tRNA synthetase class I (C) family proteinO.I.H.G.S.X.
0.3142.20.97GmaAffx.15743.1.S1_atCA802922--8e-27At2g47250RNA helicase, putativeO.I.H.G.S.X.
0.3040.40.96Gma.4965.1.S1_atBI970010--2e-9At5g47680-O.I.H.G.S.X.
0.2939.00.97Gma.4456.1.S1_atBI320504--4e+0At5g48640cyclin family proteinO.I.H.G.S.X.
0.2939.00.97Gma.10328.1.S1_atBE058328--3e+0At3g63190RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)O.I.H.G.S.X.
0.2839.00.96Gma.16782.1.S1_atCD412337--2e-41At1g29880glycyl-tRNA synthetase / glycine--tRNA ligaseO.I.H.G.S.X.
0.2839.00.97GmaAffx.90667.1.A1_atCF806392--1e+1At5g45350proline-rich family proteinO.I.H.G.S.X.
0.2839.00.97Gma.2845.1.S1_atBI426775--6e-20At5g53620unknown proteinO.I.H.G.S.X.
0.2735.70.98Gma.3929.1.A1_atBU545629--4e-10At5g18400unknown proteinO.I.H.G.S.X.
0.2735.70.97GmaAffx.43913.1.S1_atBE823613--9e-4At5g09880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2633.90.98Gma.8114.1.S1_atCD398562--4e-45At4g19210ATRLI2O.I.H.G.S.X.
0.2633.90.97Gma.16719.1.S1_atBI970910--1e-15At3g11910UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)O.I.H.G.S.X.
0.2633.90.97Gma.2609.2.A1_atAW311028--3e-9At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.2633.90.97Gma.3935.1.S1_atBE609506--1e-4At1g11660heat shock protein, putativeO.I.H.G.S.X.
0.2532.60.97Gma.12975.1.A1_atCD390818--4e-1At3g08020protein binding / zinc ion bindingO.I.H.G.S.X.
0.2430.90.97GmaAffx.20850.1.S1_atAW164293--3e+0At1g19970ER lumen protein retaining receptor family proteinO.I.H.G.S.X.
0.2430.90.97Gma.6228.1.S1_atBF595226--3e-123At1g53750RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)O.I.H.G.S.X.
0.2329.90.98Gma.18098.1.S1_atBI095096--3e-6At5g35430bindingO.I.H.G.S.X.
0.2228.10.97Gma.3090.1.S1_atBI945685--3e-8At5g17900-O.I.H.G.S.X.
0.2228.10.97GmaAffx.69688.11.A1_s_atCD413010--3e+0At2g36680-O.I.H.G.S.X.
0.2126.60.97Gma.7667.1.S1_atAW781737--2e-11At4g24840-O.I.H.G.S.X.
0.2126.60.96GmaAffx.23184.2.A1_atBG651576--1e+0At2g24765ARF3 (ADP-RIBOSYLATION FACTOR 3)O.I.H.G.S.X.
0.1822.30.97Gma.6325.1.S1_atBQ612904--4e-4At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.1619.70.97GmaAffx.10916.1.S1_atCD413729--1e+0At5g23290PDF5 (PREFOLDIN 5)O.I.H.G.S.X.
0.1619.70.97Gma.6669.1.S1_atAI960146--2e-13At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.
0.1518.70.97Gma.7693.2.S1_x_atCD400086--6e-109At5g06360ribosomal protein S8e family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.998.8GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
6.698.7GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
6.598.7GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
6.198.5GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.998.5GSM182042Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.798.4GSM184829Whole Seed at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.798.4GSM191081Soybean_Cotyledon_EN1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.698.3GSM184828Whole Seed at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.598.3GSM182041Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.498.2GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.498.2GSM182047Whole Seed at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.398.2GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.398.2GSM191091Soybean_Cotyledon_SEED1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.398.2GSM191092Soybean_Cotyledon_SEED2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.298.1GSM182031Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.298.1GSM191082Soybean_Cotyledon_EN2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.098.0GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.897.9GSM182048Whole Seed at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.697.7GSM182030Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.697.7GSM191083Soybean_Cotyledon_EPD1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.697.7GSM191075Soybean_Cotyledon_EP1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.697.7GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.597.7GSM182029Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.497.6GSM182038Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.497.6GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.497.6GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.397.5GSM147949Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.297.4GSM191076Soybean_Cotyledon_EP2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.197.3GSM147948Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.197.3GSM191085Soybean_Cotyledon_HI1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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