Co-expression analysis

Gene ID	Gma.10960.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g20510: OPCL1 (OPC-8:0 COA LIGASE1) (HF=2e-29)
Module size	6 genes
NF	0.23
%ile	47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	0.97	Gma.10960.1.S1_s_at	BQ453915	-	-	2e-29	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.93379.1.S1_s_at	CF809104	-	-	2e-24	At1g49670	NQR	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.6885.1.A1_at	BU545705	-	-	2e-2	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	GmaAffx.64117.1.S1_at	BG239723	-	-	1e-5	At1g67970	AT-HSFA8	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	GmaAffx.2179.1.S1_at	CD407818	-	-	6e-22	At4g22990	SPX (SYG1/Pho81/XPR1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.97	Gma.1106.1.S1_at	CD416163	-	-	1e-1	At5g53330	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610552_at, orthologous to the query gene, Gma.10960.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	1610552_at	At1g20510	-	-	5e-10	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1608633_s_at	At1g20510	hypothetical protein LOC100253479	-	1e-26	At5g62740	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1621554_s_at	At1g20510	similar to Os03g0670700	-	4e-6	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1616828_s_at	At1g20510	similar to Os03g0670700	-	1e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1616273_at	At1g20510	hypothetical protein LOC100252917	-	6e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1613552_at	At1g20510	hypothetical LOC100243703	-	1e-3	At5g58700	phosphoinositide-specific phospholipase C family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1618421_at	At1g20510	hypothetical protein LOC100252493	-	6e-6	At3g57560	aspartate/glutamate/uridylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1619104_s_at	At1g20510	hypothetical protein LOC100242520	-	1e-41	At3g23940	dehydratase family	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage