Co-expression analysis

Gene ID	Gma.10960.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g20510: OPCL1 (OPC-8:0 COA LIGASE1) (HF=2e-29)
Module size	6 genes
NF	0.23
%ile	47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	0.97	Gma.10960.1.S1_s_at	BQ453915	-	-	2e-29	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.93379.1.S1_s_at	CF809104	-	-	2e-24	At1g49670	NQR	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.6885.1.A1_at	BU545705	-	-	2e-2	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	GmaAffx.64117.1.S1_at	BG239723	-	-	1e-5	At1g67970	AT-HSFA8	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	GmaAffx.2179.1.S1_at	CD407818	-	-	6e-22	At4g22990	SPX (SYG1/Pho81/XPR1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.97	Gma.1106.1.S1_at	CD416163	-	-	1e-1	At5g53330	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig10937_at, orthologous to the query gene, Gma.10960.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig10937_at	At1g20510	-	-	3e-10	At1g20490	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	rbaal22m07_at	At1g20510	-	-	2e-1	At1g06440	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig8332_at	At1g20510	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig15347_at	At1g20510	-	-	3e-2	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	O.I.	H.G.	S.X.	Please select
0.43	56.4	HV_CEa0010M13r2_s_at	At1g20510	-	-	9e-1	At4g01670	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig9752_at	At1g20510	-	-	3e+0	At2g11651	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig19283_at	At1g20510	-	-	2e+1	Atmg00840	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig14607_at	At1g20510	-	-	2e+0	At4g37440	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig9449_s_at	At1g20510	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig725_s_at	At1g20510	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig11259_at	At1g20510	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig17511_at	At1g20510	-	-	8e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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