Co-expression analysis

Gene ID Gma.10927.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g45160: root hair defective 3 GTP-binding (RHD3) family protein (HF=2e-7)
Module size 6 genes
NF 0.66
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.99Gma.10927.1.S1_atCD398961--2e-7At5g45160root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.6786.10.99Gma.8094.1.S1_atAW309295--4e-123At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.6080.70.99Gma.2064.1.S1_atBE821945--5e-67At4g18710BIN2 (BRASSINOSTEROID-INSENSITIVE 2)O.I.H.G.S.X.
0.5576.30.98GmaAffx.54705.1.S1_atBI094925--7e+0At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.4463.30.99Gma.3757.1.S1_atCD405183--6e-53At3g46460UBC13 (ubiquitin-conjugating enzyme 13)O.I.H.G.S.X.
0.3650.80.99Gma.1066.1.S1_atBG363651--4e-67At3g13670protein kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.097.2GSM29217834-1006.1A.R003P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29339074_1588.1Q.R230P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29361342_2054.2B.R307P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage