CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.10860.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g19860: lecithin:cholesterol acyltransferase family protein / LACT family protein (HF=7e-26)

Module size 6 genes

NF 0.63

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 0.99 Gma.10860.1.S1_at AW350087 - - 7e-26 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein O.I. H.G. S.X.
0.80 91.5 0.99 Gma.10860.1.S1_a_at AW350087 - - 9e-13 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein O.I. H.G. S.X.
0.77 90.3 0.98 Gma.10860.3.A1_at BE210775 - - 1e+0 At5g52220 - O.I. H.G. S.X.
0.46 65.5 0.99 Gma.12076.1.S1_at CD410539 - - 1e-45 At4g31860 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.40 57.1 0.99 Gma.5237.1.S1_at BQ298220 - - 8e-10 At3g55960 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.36 50.8 0.99 Gma.2063.1.S1_at AB070857.2 aspartic proteinase 2 - 2e-8 At1g11910 aspartyl protease family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 96.4 GSM293126 3_C038.1O.R9O1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293105 20_C054.1O.R9O3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292596 26_C146.1I.V7I1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0 95.6 GSM292890 65_C202.1L.R9L1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g19860, orthologous to the query gene, Gma.10860.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.29 30.3 At4g19860 827730 lecithin:cholesterol acyltransferase family protein / LACT family protein F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:cellular_component unknown;MOPBFA O.I. H.G. S.X.
0.40 50.8 At5g19860 832107 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PO O.I. H.G. S.X.
0.40 50.8 At5g59960 836118 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO O.I. H.G. S.X.
0.36 43.6 At3g51730 824336 saposin B domain-containing protein F:molecular_function unknown;P:lipid metabolic process;C:vacuole;MOP O.I. H.G. S.X.
0.16 8.8 At3g30390 822740 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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