Co-expression analysis

Gene ID	Gma.10818.2.S1_at
Gene name	WRKY78
Homology with Arabidopsis	Similar to At1g80840: WRKY40 (HF=8e-23)
Module size	6 genes
NF	0.67
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.97	Gma.10818.2.S1_at	AW568786	WRKY78	-	8e-23	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	Gma.3730.2.S1_a_at	BI320846	transcription factor	-	9e-15	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.97	GmaAffx.91768.1.S1_s_at	CF807493	transcription factor	-	1e-6	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.17284.1.A1_s_at	BE659740	-	-	2e+0	At5g14330	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.5519.3.S1_x_at	AW459852	-	-	6e-37	At5g63790	ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.5519.2.S1_at	BM188080	-	-	8e-19	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.6	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM292458	58_1257.1G.R164U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292459	59_1282.1G.R179P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292481	79_1257.1G.R164L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292210	72-C002.1A.V7A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292273	18_1177.1E.R109U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292469	68_1280.1G.R178P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.44.1.A1_at, orthologous to the query gene, Gma.10818.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	ZmAffx.44.1.A1_at	At1g80840	-	-	8e-1	At4g32060	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	ZmAffx.656.2.A1_at	At1g80840	-	-	1e+0	At3g27329	-	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.889.2.S1_at	At1g80840	-	-	4e-20	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.10002.1.A1_a_at	At1g80840	-	-	2e+0	At1g67060	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	RPTR-Zm-U89963-1_x_at	At1g80840	-	-				O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.1079.6.A1_at	At1g80840	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	O.I.	H.G.	S.X.	Please select
0.42	51.3	ZmAffx.397.1.A1_at	At1g80840	-	-	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.9142.1.A1_at	At1g80840	-	-	4e-1	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.9745.1.A1_at	At1g80840	-	-	2e+1	At5g24570	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	ZmAffx.715.1.S1_at	At1g80840	-	-	2e-1	At1g04670	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	ZmAffx.302.1.A1_at	At1g80840	-	-	8e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.652.1.S1_at	At1g80840	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.31	31.6	ZmAffx.675.1.A1_at	At1g80840	-	-	3e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.9756.1.A1_at	At1g80840	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select
0.30	29.8	ZmAffx.944.1.S1_at	At1g80840	-	-	2e-10	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.628.1.S1_at	At1g80840	-	-	1e+1	At5g13340	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.16502.9.A1_a_at	At1g80840	60S ribosomal protein L36-2	-	3e+0	At5g21125	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.19028.1.S1_at	At1g80840	hypothetical protein LOC100192863	-	4e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	ZmAffx.1055.1.S1_at	At1g80840	hypothetical protein LOC100279811	-	5e-2	At4g01940	NFU1	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.16180.1.A1_at	At1g80840	-	-	5e-2	At2g28440	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	ZmAffx.144.1.S1_at	At1g80840	-	-	8e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select
0.17	10.6	ZmAffx.890.1.S1_at	At1g80840	protein dimerization	-	3e+0	At5g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	ZmAffx.1056.1.A1_at	At1g80840	-	-	3e+0	At1g31370	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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