Co-expression analysis

Gene ID	Gma.10818.2.S1_at
Gene name	WRKY78
Homology with Arabidopsis	Similar to At1g80840: WRKY40 (HF=8e-23)
Module size	6 genes
NF	0.67
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.97	Gma.10818.2.S1_at	AW568786	WRKY78	-	8e-23	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	Gma.3730.2.S1_a_at	BI320846	transcription factor	-	9e-15	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.97	GmaAffx.91768.1.S1_s_at	CF807493	transcription factor	-	1e-6	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.17284.1.A1_s_at	BE659740	-	-	2e+0	At5g14330	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.5519.3.S1_x_at	AW459852	-	-	6e-37	At5g63790	ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.5519.2.S1_at	BM188080	-	-	8e-19	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.6	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM292458	58_1257.1G.R164U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292459	59_1282.1G.R179P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292481	79_1257.1G.R164L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292210	72-C002.1A.V7A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292273	18_1177.1E.R109U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292469	68_1280.1G.R178P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1614806_s_at, orthologous to the query gene, Gma.10818.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1614806_s_at	At1g80840	hypothetical protein LOC100264507	-	2e-4	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.70	88.6	1610064_at	At1g80840	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	O.I.	H.G.	S.X.	Please select
0.67	87.9	1616557_s_at	At1g80840	hypothetical protein LOC100252599	-	3e-2	At1g01490	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	1614461_s_at	At1g80840	hypothetical protein LOC100252599 /// hypothetical LOC100254334	-	3e-1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1609265_at	At1g80840	hypothetical protein LOC100255460	-	5e-2	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	1622399_at	At1g80840	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.56	79.4	1611285_s_at	At1g80840	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.53	75.2	1609171_at	At1g80840	hypothetical protein LOC100251782	-	2e-2	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1611650_at	At1g80840	hypothetical protein LOC100244122	-	3e-26	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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