Co-expression analysis

Gene ID	Gma.10818.2.S1_at
Gene name	WRKY78
Homology with Arabidopsis	Similar to At1g80840: WRKY40 (HF=8e-23)
Module size	6 genes
NF	0.67
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.97	Gma.10818.2.S1_at	AW568786	WRKY78	-	8e-23	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	Gma.3730.2.S1_a_at	BI320846	transcription factor	-	9e-15	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.97	GmaAffx.91768.1.S1_s_at	CF807493	transcription factor	-	1e-6	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.17284.1.A1_s_at	BE659740	-	-	2e+0	At5g14330	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.5519.3.S1_x_at	AW459852	-	-	6e-37	At5g63790	ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.5519.2.S1_at	BM188080	-	-	8e-19	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.6	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM292458	58_1257.1G.R164U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292459	59_1282.1G.R179P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292481	79_1257.1G.R164L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292210	72-C002.1A.V7A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292273	18_1177.1E.R109U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292469	68_1280.1G.R178P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, Ta.29394.1.S1_at, orthologous to the query gene, Gma.10818.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	Ta.29394.1.S1_at	At1g80840	-	-	4e-16	At2g37260	TTG2 (TRANSPARENT TESTA GLABRA 2)	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.32532.1.S1_s_at	At1g80840	-	-	8e-1	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.6666.2.S1_x_at	At1g80840	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.105929.1.S1_at	At1g80840	-	-	4e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.6666.2.S1_at	At1g80840	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.77721.1.S1_at	At1g80840	-	-	1e+0	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.12269.1.S1_at	At1g80840	-	-	1e-21	At5g56290	PEX5 (PEROXIN 5)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6666.3.S1_x_at	At1g80840	-	-	4e-3	At3g03180	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.5522.2.S1_a_at	At1g80840	-	-	1e+0	At2g13150	transcription factor	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.31914.1.S1_at	At1g80840	-	-	6e+0	At2g42900	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.122520.1.S1_at	At1g80840	-	-	1e-5	At5g08470	PEX1 (peroxisome 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.14945.1.S1_at	At1g80840	-	-	5e-7	At1g10040	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.12327.2.S1_s_at	At1g80840	-	-	4e+0	At3g58720	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.7147.3.S1_a_at	At1g80840	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.25425.2.S1_a_at	At1g80840	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.5613.2.S1_at	At1g80840	autophagy protein 9	-	6e-10	At2g31260	APG9 (autophagy 9)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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