Co-expression analysis

Gene ID	Gma.10620.1.S1_at
Gene name	conversion of hydroxypyruvate to glycerate
Homology with Arabidopsis	Similar to At1g68010: HPR (HF=4e-89)
Module size	6 genes
NF	0.59
%ile	89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.10620.1.S1_at	AF503360.1	conversion of hydroxypyruvate to glycerate	-	4e-89	At1g68010	HPR	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	Gma.7210.1.S1_at	BE822041	-	-	3e-52	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.97	Gma.2503.1.S1_s_at	AF503361.1	oxidoreductase /// conversion of hydroxypyruvate to glycerate	-	6e-94	At1g68010	HPR	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.7309.2.S1_s_at	CD408975	Peroxisomal glycolate oxidase	-	4e-148	At3g14415	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.97	Gma.2503.1.S1_at	AF503361.1	oxidoreductase	-	6e-94	At1g68010	HPR	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	Gma.7214.1.S1_at	CD412786	-	-	3e-114	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.4	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.1	99.2	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.8	99.1	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.3	99.1	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.3	99.1	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.3	99.1	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.3	99.1	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.0	99.0	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.0	99.0	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.9	99.0	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.9	99.0	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.9	99.0	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.7	99.0	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.6	98.9	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.5	98.9	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.5	98.9	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.3	98.9	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.2	98.9	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.2	98.9	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.2	98.9	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.9	98.8	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.9	98.8	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.9	98.8	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.7	98.7	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.7	98.7	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.7	98.7	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.5	98.7	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.4	98.6	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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