Co-expression analysis

Gene ID	Gma.10072.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g72970: HTH (HOTHEAD) (HF=1e-11)
Module size	6 genes
NF	0.60
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.3	0.78	Gma.10072.1.S1_at	CD399353	-	-	1e-11	At1g72970	HTH (HOTHEAD)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.75	Gma.15814.1.A1_at	BI967506	-	-	1e-2	At4g03210	XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.81	GmaAffx.70533.1.A1_at	CD407936	-	-	3e+0	Atmg00910	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.76	Gma.12819.1.A1_at	CD391420	-	-	3e+0	At4g23271	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.80	GmaAffx.62443.1.S1_at	AW099879	-	-	7e-1	At1g12470	Pep3/Vps18/deep orange family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.81	Gma.10701.2.S1_at	AW101512	-	-	4e+0	At3g32130	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.5	99.7	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
16.6	99.6	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
14.9	99.6	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
14.3	99.6	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
14.1	99.6	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
14.0	99.6	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
13.6	99.5	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
13.3	99.5	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
12.5	99.5	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
11.2	99.4	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
10.4	99.3	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.1	98.8	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.5	98.3	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.3	98.2	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.2	98.1	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.1	98.1	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.0	98.0	GSM182048	Whole Seed at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.8	97.9	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.7	97.8	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.6	97.7	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM184828	Whole Seed at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.6	96.7	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.0	95.6	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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