CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.10004.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g36290: unknown protein (HF=6e-25)

Module size 6 genes

NF 0.82

%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.5 0.97 Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein O.I. H.G. S.X.
0.91 98.6 0.97 Gma.1913.1.S1_at BI970928 - - 0 At2g37620 ACT1 (ACTIN 1) O.I. H.G. S.X.
0.83 92.5 0.97 Gma.1324.1.S1_at BE658235 - - 1e-131 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) O.I. H.G. S.X.
0.80 91.5 0.97 Gma.7774.1.S1_at CD401719 - - 1e-26 At3g10540 3-phosphoinositide-dependent protein kinase, putative O.I. H.G. S.X.
0.80 91.5 0.98 Gma.15367.1.S1_at CD412241 - - 7e-60 At3g59910 - O.I. H.G. S.X.
0.67 86.1 0.98 Gma.2135.1.S1_a_at BE660424 - - 7e-1 At3g26400 EIF4B1 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.59	79.5	0.97	Gma.10004.1.S1_at	BF070937	-	-	6e-25	At5g36290	unknown protein	O.I.	H.G.	S.X.
0.91	98.6	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.
0.83	92.5	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.
0.80	91.5	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.
0.67	86.1	0.98	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.3 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.8 99.8 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
29.3	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.8	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the wheat gene, Ta.9324.2.S1_a_at, orthologous to the query gene, Gma.10004.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.99 100.0 Ta.9324.2.S1_a_at At5g36290 - - 4e-4 At5g36290 unknown protein O.I. H.G. S.X.
0.27 35.6 Ta.25423.1.S1_at At5g36290 - - 2e+0 At3g14480 glycine/proline-rich protein O.I. H.G. S.X.
0.27 35.6 TaAffx.84726.1.S1_x_at At5g36290 - - 2e+1 At2g12170 unknown protein O.I. H.G. S.X.
0.27 35.6 Ta.1026.1.S1_a_at At5g36290 - - 7e-22 At5g25760 PEX4 (PEROXIN4) O.I. H.G. S.X.
0.26 33.6 Ta.2408.2.S1_a_at At5g36290 - - 1e+0 At1g53890 unknown protein O.I. H.G. S.X.
0.25 32.1 Ta.1043.1.S1_at At5g36290 - - 2e-4 At3g52800 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.25 32.1 Ta.1026.3.S1_x_at At5g36290 - - 4e-26 At5g25760 PEX4 (PEROXIN4) O.I. H.G. S.X.
0.24 30.3 TaAffx.119172.1.A1_at At5g36290 - - 1e+0 At4g23895 pleckstrin homology (PH) domain-containing protein-related O.I. H.G. S.X.
0.23 29.0 Ta.9230.1.S1_x_at At5g36290 - - 5e-1 At4g32030 unknown protein O.I. H.G. S.X.
0.23 29.0 Ta.14605.1.S1_at At5g36290 - - 3e-1 At5g64160 unknown protein O.I. H.G. S.X.
0.23 29.0 Ta.23107.3.S1_x_at At5g36290 - - 1e-28 At3g46060 ATRAB8A O.I. H.G. S.X.
0.23 29.0 Ta.2682.1.A1_at At5g36290 - - 1e-26 At2g36060 ubiquitin-conjugating enzyme family protein O.I. H.G. S.X.
0.22 27.1 Ta.6675.1.S1_at At5g36290 P34cdc2 - 3e-12 At3g48750 CDC2 (CELL DIVISION CONTROL 2) O.I. H.G. S.X.
0.21 25.5 Ta.9230.1.S1_at At5g36290 - - 5e-1 At4g32030 unknown protein O.I. H.G. S.X.
0.21 25.5 Ta.23107.3.S1_a_at At5g36290 - - 1e-28 At3g46060 ATRAB8A O.I. H.G. S.X.
0.21 25.5 Ta.13248.1.S1_at At5g36290 - - 1e-2 At4g32960 unknown protein O.I. H.G. S.X.
0.19 22.4 Ta.28013.1.S1_x_at At5g36290 - - 2e-3 At4g13100 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.18 21.0 Ta.1962.1.A1_at At5g36290 - - 1e-1 At3g01600 anac044 (Arabidopsis NAC domain containing protein 44) O.I. H.G. S.X.
0.18 21.0 Ta.11159.3.S1_a_at At5g36290 - - 7e-2 At1g65270 unknown protein O.I. H.G. S.X.
0.17 19.8 TaAffx.131233.1.S1_x_at At5g36290 - - 2e+0 At4g29590 methyltransferase O.I. H.G. S.X.
0.15 17.1 Ta.21086.1.S1_a_at At5g36290 - - 4e-38 At2g20930 - O.I. H.G. S.X.
0.15 17.1 Ta.14345.1.S1_at At5g36290 - - 7e+0 At2g40802 unknown protein O.I. H.G. S.X.
0.14 15.8 Ta.9176.1.S1_at At5g36290 - - 7e-47 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) O.I. H.G. S.X.
0.14 15.8 Ta.20990.1.S1_a_at At5g36290 - - 6e+0 At4g33180 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.14 15.8 Ta.3309.1.S1_s_at At5g36290 - - 3e-11 At5g47570 unknown protein O.I. H.G. S.X.
0.12 13.3 Ta.10983.1.S1_a_at At5g36290 - - 3e+0 At3g53530 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.12 13.3 Ta.6328.1.S1_at At5g36290 - - 1e-2 At4g27880 seven in absentia (SINA) family protein O.I. H.G. S.X.
0.12 13.3 Ta.23194.2.S1_a_at At5g36290 - - 1e+0 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) O.I. H.G. S.X.
0.11 12.4 Ta.11580.1.S1_at At5g36290 - - 8e+0 At4g34215 hydrolase O.I. H.G. S.X.
0.11 12.4 Ta.25017.1.S1_at At5g36290 - - 4e-21 At5g16050 GRF5 (GENERAL REGULATORY FACTOR 5) O.I. H.G. S.X.
0.11 12.4 Ta.4625.2.S1_at At5g36290 - - 4e-22 At2g39630 glycosyl transferase family 2 protein O.I. H.G. S.X.
0.11 12.4 Ta.10250.1.A1_a_at At5g36290 - - 6e-1 At2g30590 WRKY21 O.I. H.G. S.X.
0.11 12.4 Ta.50.1.S1_at At5g36290 TaWIN1 protein - 1e-24 At3g02520 GRF7 (GENERAL REGULATORY FACTOR 7) O.I. H.G. S.X.
0.10 11.3 Ta.4245.1.S1_at At5g36290 - - 2e-22 At4g30260 integral membrane Yip1 family protein O.I. H.G. S.X.
0.09 10.4 Ta.2210.1.S1_at At5g36290 - - 7e-16 At5g21070 unknown protein O.I. H.G. S.X.
0.09 10.4 Ta.13955.1.A1_at At5g36290 - - 4e-14 At4g03340 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.05 6.7 Ta.8167.2.S1_s_at At5g36290 - - 4e-1 At3g53610 ATRAB8 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.99	100.0	Ta.9324.2.S1_a_at	At5g36290	-	-	4e-4	At5g36290	unknown protein	O.I.	H.G.	S.X.
0.27	35.6	Ta.25423.1.S1_at	At5g36290	-	-	2e+0	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.
0.27	35.6	TaAffx.84726.1.S1_x_at	At5g36290	-	-	2e+1	At2g12170	unknown protein	O.I.	H.G.	S.X.
0.27	35.6	Ta.1026.1.S1_a_at	At5g36290	-	-	7e-22	At5g25760	PEX4 (PEROXIN4)	O.I.	H.G.	S.X.
0.26	33.6	Ta.2408.2.S1_a_at	At5g36290	-	-	1e+0	At1g53890	unknown protein	O.I.	H.G.	S.X.
0.25	32.1	Ta.1043.1.S1_at	At5g36290	-	-	2e-4	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.25	32.1	Ta.1026.3.S1_x_at	At5g36290	-	-	4e-26	At5g25760	PEX4 (PEROXIN4)	O.I.	H.G.	S.X.
0.24	30.3	TaAffx.119172.1.A1_at	At5g36290	-	-	1e+0	At4g23895	pleckstrin homology (PH) domain-containing protein-related	O.I.	H.G.	S.X.
0.23	29.0	Ta.9230.1.S1_x_at	At5g36290	-	-	5e-1	At4g32030	unknown protein	O.I.	H.G.	S.X.
0.23	29.0	Ta.14605.1.S1_at	At5g36290	-	-	3e-1	At5g64160	unknown protein	O.I.	H.G.	S.X.
0.23	29.0	Ta.23107.3.S1_x_at	At5g36290	-	-	1e-28	At3g46060	ATRAB8A	O.I.	H.G.	S.X.
0.23	29.0	Ta.2682.1.A1_at	At5g36290	-	-	1e-26	At2g36060	ubiquitin-conjugating enzyme family protein	O.I.	H.G.	S.X.
0.22	27.1	Ta.6675.1.S1_at	At5g36290	P34cdc2	-	3e-12	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	O.I.	H.G.	S.X.
0.21	25.5	Ta.9230.1.S1_at	At5g36290	-	-	5e-1	At4g32030	unknown protein	O.I.	H.G.	S.X.
0.21	25.5	Ta.23107.3.S1_a_at	At5g36290	-	-	1e-28	At3g46060	ATRAB8A	O.I.	H.G.	S.X.
0.21	25.5	Ta.13248.1.S1_at	At5g36290	-	-	1e-2	At4g32960	unknown protein	O.I.	H.G.	S.X.
0.19	22.4	Ta.28013.1.S1_x_at	At5g36290	-	-	2e-3	At4g13100	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.18	21.0	Ta.1962.1.A1_at	At5g36290	-	-	1e-1	At3g01600	anac044 (Arabidopsis NAC domain containing protein 44)	O.I.	H.G.	S.X.
0.18	21.0	Ta.11159.3.S1_a_at	At5g36290	-	-	7e-2	At1g65270	unknown protein	O.I.	H.G.	S.X.
0.17	19.8	TaAffx.131233.1.S1_x_at	At5g36290	-	-	2e+0	At4g29590	methyltransferase	O.I.	H.G.	S.X.
0.15	17.1	Ta.21086.1.S1_a_at	At5g36290	-	-	4e-38	At2g20930	-	O.I.	H.G.	S.X.
0.15	17.1	Ta.14345.1.S1_at	At5g36290	-	-	7e+0	At2g40802	unknown protein	O.I.	H.G.	S.X.
0.14	15.8	Ta.9176.1.S1_at	At5g36290	-	-	7e-47	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.
0.14	15.8	Ta.20990.1.S1_a_at	At5g36290	-	-	6e+0	At4g33180	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.14	15.8	Ta.3309.1.S1_s_at	At5g36290	-	-	3e-11	At5g47570	unknown protein	O.I.	H.G.	S.X.
0.12	13.3	Ta.10983.1.S1_a_at	At5g36290	-	-	3e+0	At3g53530	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.12	13.3	Ta.6328.1.S1_at	At5g36290	-	-	1e-2	At4g27880	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.
0.12	13.3	Ta.23194.2.S1_a_at	At5g36290	-	-	1e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.
0.11	12.4	Ta.11580.1.S1_at	At5g36290	-	-	8e+0	At4g34215	hydrolase	O.I.	H.G.	S.X.
0.11	12.4	Ta.25017.1.S1_at	At5g36290	-	-	4e-21	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.
0.11	12.4	Ta.4625.2.S1_at	At5g36290	-	-	4e-22	At2g39630	glycosyl transferase family 2 protein	O.I.	H.G.	S.X.
0.11	12.4	Ta.10250.1.A1_a_at	At5g36290	-	-	6e-1	At2g30590	WRKY21	O.I.	H.G.	S.X.
0.11	12.4	Ta.50.1.S1_at	At5g36290	TaWIN1 protein	-	1e-24	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.
0.10	11.3	Ta.4245.1.S1_at	At5g36290	-	-	2e-22	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.
0.09	10.4	Ta.2210.1.S1_at	At5g36290	-	-	7e-16	At5g21070	unknown protein	O.I.	H.G.	S.X.
0.09	10.4	Ta.13955.1.A1_at	At5g36290	-	-	4e-14	At4g03340	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.
0.05	6.7	Ta.8167.2.S1_s_at	At5g36290	-	-	4e-1	At3g53610	ATRAB8	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Gma.10004.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g36290: unknown protein (HF=6e-25)
Module size	6 genes
NF	0.82
%ile	98.6

Co-expression analysis

Gene ID Gma.10004.1.S1_at Gene name Homology with ArabidopsisSimilar to At5g36290: unknown protein (HF=6e-25) Module size 6 genes NF 0.82 %ile 98.6

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Gma.10004.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g36290: unknown protein (HF=6e-25)

Module size 6 genes

NF 0.82

%ile 98.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays