Co-expression analysis

Gene ID	Gma.10004.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g36290: unknown protein (HF=6e-25)
Module size	6 genes
NF	0.82
%ile	98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.5	0.97	Gma.10004.1.S1_at	BF070937	-	-	6e-25	At5g36290	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.3	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.8	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the barley gene, Contig14363_at, orthologous to the query gene, Gma.10004.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig14363_at	At5g36290	-	-	4e-8	At5g36290	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig12168_at	At5g36290	-	-	4e-1	At4g16980	arabinogalactan-protein family	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig15356_at	At5g36290	-	-	5e-1	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.01	1.1	HM14B07r_at	At5g36290	-	-	5e+0	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.00	0.2	Contig4807_at	At5g36290	-	-	8e-11	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please select
0.00	0.2	EBem10_SQ001_L08_at	At5g36290	-	-	1e-1	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage