CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.10004.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g36290: unknown protein (HF=6e-25)

Module size 6 genes

NF 0.82

%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.5 0.97 Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein O.I. H.G. S.X.
0.91 98.6 0.97 Gma.1913.1.S1_at BI970928 - - 0 At2g37620 ACT1 (ACTIN 1) O.I. H.G. S.X.
0.83 92.5 0.97 Gma.1324.1.S1_at BE658235 - - 1e-131 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) O.I. H.G. S.X.
0.80 91.5 0.97 Gma.7774.1.S1_at CD401719 - - 1e-26 At3g10540 3-phosphoinositide-dependent protein kinase, putative O.I. H.G. S.X.
0.80 91.5 0.98 Gma.15367.1.S1_at CD412241 - - 7e-60 At3g59910 - O.I. H.G. S.X.
0.67 86.1 0.98 Gma.2135.1.S1_a_at BE660424 - - 7e-1 At3g26400 EIF4B1 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.3 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.8 99.8 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g36290, orthologous to the query gene, Gma.10004.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.59 74.7 At5g36290 833627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFA O.I. H.G. S.X.
0.67 81.6 At1g14670 838029 endomembrane protein 70, putative F:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOF O.I. H.G. S.X.
0.50 65.3 At4g12650 826878 - F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, vacuole;MPOF O.I. H.G. S.X.
0.42 53.9 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB O.I. H.G. S.X.
0.36 43.6 At3g05280 819692 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.32 35.7 At1g61790 842476 OST3/OST6 family protein F:oligosaccharide transmembrane transporter activity;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, chloroplast;MFPO O.I. H.G. S.X.
0.32 35.7 At3g56110 824777 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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