CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.1.1.A1_at

Gene name lipoxygenase
Homology with Arabidopsis Similar to At5g20180: ribosomal protein L36 family protein (HF=5e-1)

Module size 6 genes

NF 0.00

%ile 3.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.78 Gma.1.1.A1_at U36442.1 lipoxygenase - 5e-1 At5g20180 ribosomal protein L36 family protein O.I. H.G. S.X.
0.02 4.5 0.95 GmaAffx.90612.1.S1_at CF806337 - - 2e-14 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) O.I. H.G. S.X.
- 1.4 0.95 GmaAffx.83815.1.S1_s_at BG404904 - - 1e+0 At1g04330 unknown protein O.I. H.G. S.X.
- 1.4 0.92 Gma.13586.1.S1_at CD401142 - - 1e+0 At3g48970 copper-binding family protein O.I. H.G. S.X.
- 1.4 0.92 GmaAffx.93566.1.S1_at CF809291 - - 1e+0 At3g51030 ATTRX1 O.I. H.G. S.X.
- 1.4 0.95 Gma.6806.2.S1_a_at BE806131 - - 9e-13 At3g05230 signal peptidase subunit family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 98.9 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the rice gene, Os09g0397200, orthologous to the query gene, Gma.1.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os09g0397200 At5g20180 - Conserved hypothetical protein 7e-2 At1g35333 unknown protein O.I. H.G. S.X.
0.10 5.7 Os05g0169200 At5g20180 - WD40-like domain containing protein 1e-15 At2g40810 AtATG18c O.I. H.G. S.X.
0.08 4.2 Os04g0407800 At5g20180 - 2OG-Fe(II) oxygenase domain containing protein 1e-2 At1g19350 BES1 (BRI1-EMS-SUPPRESSOR 1) O.I. H.G. S.X.
0.06 3.0 Os02g0558500 At5g20180 - Conserved hypothetical protein 3e+0 At5g65480 unknown protein O.I. H.G. S.X.
0.06 3.0 Os05g0220900 At5g20180 - Conserved hypothetical protein 5e-2 At1g07135 glycine-rich protein O.I. H.G. S.X.
0.03 1.4 Os02g0231600 At5g20180 - Transposase (Fragment) 1e-2 At5g65910 BSD domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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