Co-expression analysis

Gene ID	Gma.1.1.A1_at
Gene name	lipoxygenase
Homology with Arabidopsis	Similar to At5g20180: ribosomal protein L36 family protein (HF=5e-1)
Module size	6 genes
NF	0.00
%ile	3.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.78	Gma.1.1.A1_at	U36442.1	lipoxygenase	-	5e-1	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.95	GmaAffx.90612.1.S1_at	CF806337	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select
-	1.4	0.95	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.92	Gma.13586.1.S1_at	CD401142	-	-	1e+0	At3g48970	copper-binding family protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.92	GmaAffx.93566.1.S1_at	CF809291	-	-	1e+0	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please select
-	1.4	0.95	Gma.6806.2.S1_a_at	BE806131	-	-	9e-13	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig23795_at, orthologous to the query gene, Gma.1.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig23795_at	At5g20180	-	-	1e+1	At5g49220	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig1364_at	At5g20180	-	-	4e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig14007_at	At5g20180	-	-	2e-1	At2g17780	MCA2 (mid1-complementing activity 2)	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig742_at	At5g20180	-	-	4e-3	At1g48920	ATNUC-L1	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig7625_at	At5g20180	-	-	4e-1	At5g36659	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig9113_at	At5g20180	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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