Co-expression analysis

Gene ID Gma.1.1.A1_at
Gene name lipoxygenase
Homology with ArabidopsisSimilar to At5g20180: ribosomal protein L36 family protein (HF=5e-1)
Module size 6 genes
NF 0.00
%ile 3.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.78Gma.1.1.A1_atU36442.1lipoxygenase-5e-1At5g20180ribosomal protein L36 family proteinO.I.H.G.S.X.
0.024.50.95GmaAffx.90612.1.S1_atCF806337--2e-14At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.
-1.40.95GmaAffx.83815.1.S1_s_atBG404904--1e+0At1g04330unknown proteinO.I.H.G.S.X.
-1.40.92Gma.13586.1.S1_atCD401142--1e+0At3g48970copper-binding family proteinO.I.H.G.S.X.
-1.40.92GmaAffx.93566.1.S1_atCF809291--1e+0At3g51030ATTRX1O.I.H.G.S.X.
-1.40.95Gma.6806.2.S1_a_atBE806131--9e-13At3g05230signal peptidase subunit family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.9GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g20180, orthologous to the query gene, Gma.1.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g20180832141ribosomal protein L36 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFMO.I.H.G.S.X.
0.5974.7At5g0385083169240S ribosomal protein S28 (RPS28B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPFO.I.H.G.S.X.
0.5873.8At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.H.G.S.X.
0.5773.8At5g5842083595540S ribosomal protein S4 (RPS4D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;MOAFPO.I.H.G.S.X.
0.5570.6At4g2939082906040S ribosomal protein S30 (RPS30B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAVO.I.H.G.S.X.
0.5469.5At1g5230084166060S ribosomal protein L37 (RPL37B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome;MAOFPO.I.H.G.S.X.
0.5469.5At1g7794084412960S ribosomal protein L30 (RPL30B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPBO.I.H.G.S.X.
0.5469.5At4g3386582952940S ribosomal protein S29 (RPS29C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPFO.I.H.G.S.X.
0.5368.6At2g20585816581NFD6 (NUCLEAR FUSION DEFECTIVE 6)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.5368.6At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.H.G.S.X.
0.5166.3At3g1874082140560S ribosomal protein L30 (RPL30C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPBO.I.H.G.S.X.
0.4862.5At3g06610819840DNA-binding enhancer protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.4761.2At5g08040830698TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;PO.I.H.G.S.X.
0.4659.8At1g61570842453TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.O.I.H.G.S.X.
0.4457.2At3g0950082010760S ribosomal protein L35 (RPL35A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFPO.I.H.G.S.X.
0.4355.3At5g5667083576840S ribosomal protein S30 (RPS30C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAVO.I.H.G.S.X.
0.4152.4At5g5729083583460S acidic ribosomal protein P3 (RPP3B)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus;MPFOBVAO.I.H.G.S.X.
0.4152.4At3g4398082351540S ribosomal protein S29 (RPS29A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPFO.I.H.G.S.X.
0.3948.4At1g476253767388-pseudogene of seven transmembrane domain proteinO.I.H.G.S.X.
0.3948.4At3g1009082017040S ribosomal protein S28 (RPS28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFO.I.H.G.S.X.
0.3846.7At4g09320826515NDPK1nucleoside diphosphate kinase type 1 (NDPK1) gene, completeO.I.H.G.S.X.
0.3846.7At5g23740832439RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)Encodes a putative ribosomal protein S11 (RPS11-beta).O.I.H.G.S.X.
0.3643.6At3g52590824425UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)Ubiquitin extension proteinO.I.H.G.S.X.
0.3439.8At1g0448083951160S ribosomal protein L23 (RPL23A)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMAFO.I.H.G.S.X.
0.3338.1At5g64350836556FKBP12 (FK506-BINDING PROTEIN)F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOFPAO.I.H.G.S.X.
0.3338.1At1g4188084079960S ribosomal protein L35a (RPL35aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MOFPAO.I.H.G.S.X.
0.3235.7At5g5265083534240S ribosomal protein S10 (RPS10C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOPFBVO.I.H.G.S.X.
0.3133.8At3g46560823809TIM9Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.O.I.H.G.S.X.
0.3133.8At2g0439081497840S ribosomal protein S17 (RPS17A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane;MOAFPO.I.H.G.S.X.
0.3133.8At4g1810082753560S ribosomal protein L32 (RPL32A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;MAOPFO.I.H.G.S.X.
0.3133.8At3g2483082208160S ribosomal protein L13A (RPL13aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane;OMBAPFO.I.H.G.S.X.
0.3133.8At4g15770827257RNA binding / protein bindingF:protein binding, RNA binding;P:ribosome assembly, ribosome biogenesis;C:nucleus;MFOPAO.I.H.G.S.X.
0.3032.1At4g09800826569RPS18C (S18 RIBOSOMAL PROTEIN)encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complexO.I.H.G.S.X.
0.2930.3At1g1593083816340S ribosomal protein S12 (RPS12A)F:structural constituent of ribosome;P:response to cadmium ion, response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome;MAOFPO.I.H.G.S.X.
0.2830.3At1g32210840113ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.O.I.H.G.S.X.
0.2726.2At3g52730824439ubiquinol-cytochrome C reductase UQCRX/QCR9-like family proteinF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial envelope, mitochondrion, mitochondrial respiratory chain complex III, membrane;PFMOO.I.H.G.S.X.
0.2624.4At5g55190835612RAN3 (RAN GTPASE 3)A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.O.I.H.G.S.X.
0.2522.6At3g0556081972260S ribosomal protein L22-2 (RPL22B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOPO.I.H.G.S.X.
0.2522.6At2g36170818189ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)F:protein binding, structural constituent of ribosome;P:protein modification process, translation;C:cytosolic large ribosomal subunit, nucleolus;MPOFVBO.I.H.G.S.X.
0.2522.6At1g72170843548unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPOO.I.H.G.S.X.
0.2319.3At1g22840838889CYTC-1 (CYTOCHROME C-1)Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers.O.I.H.G.S.X.
0.2115.8At5g2777083283960S ribosomal protein L22 (RPL22C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane, membrane;MFOPO.I.H.G.S.X.
0.2014.4At3g6077082524840S ribosomal protein S13 (RPS13A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, cell wall, chloroplast;MOAFPO.I.H.G.S.X.
0.2014.4At1g77350844071unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.H.G.S.X.
0.157.8At3g12370820415ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPO.I.H.G.S.X.
0.146.8At2g25355817074exonuclease-relatedF:RNA binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MFOPAO.I.H.G.S.X.
0.135.8At2g35520818117DAD2 (DEFENDER AGAINST CELL DEATH 2)F:molecular_function unknown;P:anti-apoptosis;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.135.8At1g34350840336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.114.1At4g00860826213ATOZI1putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains.O.I.H.G.S.X.
0.103.4At1g54990841941AXR4 (AUXIN RESISTANT 4)auxin response mutant (AXR4)O.I.H.G.S.X.
0.092.8At3g12180820395cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.082.3At5g10350830899polyadenylate-binding protein family protein / PABP family proteinF:protein binding, RNA binding, poly(A) binding;P:biological_process unknown;C:plasma membrane;MFPOBAO.I.H.G.S.X.
0.071.9At2g20930816627-F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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