CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID EBro08_SQ010_D12_at

Gene name
Homology with Arabidopsis Similar to At5g03550: - (HF=2e-1)

Module size 6 genes

NF 0.42

%ile 57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.93 EBro08_SQ010_D12_at EBro08_SQ010_D12 - - 2e-1 At5g03550 - O.I. H.G. S.X.
0.50 66.9 0.97 Contig25667_x_at Contig25667 - - 7e-1 At1g24000 Bet v I allergen family protein O.I. H.G. S.X.
0.50 66.9 0.97 HVSMEg0002G01r2_x_at HVSMEg0002G01r2 - - 6e+0 At5g39360 EDL2 (EID1-like 2) O.I. H.G. S.X.
0.40 53.1 0.97 EBro08_SQ001_H04_at EBro08_SQ001_H04 - - 1e+1 At5g23027 unknown protein O.I. H.G. S.X.
0.33 42.6 0.97 EBro02_SQ008_P15_at EBro02_SQ008_P15 - - 1e+1 At5g43211 unknown protein O.I. H.G. S.X.
0.13 11.6 0.97 EBem04_SQ003_H15_at EBem04_SQ003_H15 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.93	EBro08_SQ010_D12_at	EBro08_SQ010_D12	-	-	2e-1	At5g03550	-	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.50	66.9	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.
0.40	53.1	0.97	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.
0.13	11.6	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	88.7	0.96	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.93	Contig217_at	Contig217	-	-	7e-31	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.
0.67	84.7	0.94	Contig17826_at	Contig17826	-	-	3e-14	At4g32980	ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)	O.I.	H.G.	S.X.
0.67	84.7	0.94	HD02P05u_at	HD02P05u	-	-	5e-3	At2g37320	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	HU12B19u_at	HU12B19u	-	-	3e+0	At2g03430	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	HT08O05u_at	HT08O05u	-	-	7e-1	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.
0.61	78.7	0.92	HVSMEm0022A05r2_at	HVSMEm0022A05r2	-	-	5e+0	Atmg00890	-	O.I.	H.G.	S.X.
0.61	78.7	0.95	HV14M05r_at	HV14M05r	-	-	9e-2	At5g38490	DNA binding	O.I.	H.G.	S.X.
0.61	78.7	0.96	HVSMEa0012H02f2_at	HVSMEa0012H02f2	-	-	4e+0	At3g02555	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.93	HV14B03u_at	HV14B03u	-	-	3e+0	At4g36170	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.95	Contig1017_at	Contig1017	-	-	4e-48	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.
0.60	77.3	0.95	HX09K05r_at	HX09K05r	-	-	4e+0	At2g20080	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.96	Contig25915_at	Contig25915	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.60	77.3	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.
0.57	74.9	0.92	Contig19015_at	Contig19015	-	-	3e-1	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.
0.57	74.9	0.96	HY03E24u_at	HY03E24u	-	-	2e+0	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	O.I.	H.G.	S.X.
0.56	74.3	0.95	Contig24662_at	Contig24662	-	-	2e-2	At4g01840	KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5)	O.I.	H.G.	S.X.
0.55	72.0	0.91	HU10F14u_at	HU10F14u	-	-	1e+1	At5g04347	-	O.I.	H.G.	S.X.
0.55	72.0	0.94	Contig26515_at	Contig26515	-	-	2e+1	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	O.I.	H.G.	S.X.
0.55	72.0	0.94	HVSMEn0020M17r2_at	HVSMEn0020M17r2	-	-	8e-1	At3g15760	unknown protein	O.I.	H.G.	S.X.
0.55	72.0	0.95	Contig14227_at	Contig14227	-	-	7e-1	At2g30810	gibberellin-regulated family protein	O.I.	H.G.	S.X.
0.55	72.0	0.95	HVSMEb0011N20f_at	HVSMEb0011N20f	-	-	3e+0	At4g32030	unknown protein	O.I.	H.G.	S.X.
0.53	69.7	0.92	Contig17115_at	Contig17115	-	-	5e+0	At5g28390	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.53	69.7	0.94	rbaal17m22_at	rbaal17m22	-	-	3e-1	At5g28615	-	O.I.	H.G.	S.X.
0.50	66.9	0.90	HO08P01S_at	HO08P01S	-	-	3e+0	At5g37730	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.91	HV_CEb0011D15r2_s_at	HV_CEb0011D15r2	-	-	1e-6	At5g47870	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	HS08H14u_at	HS08H14u	-	-	1e+0	At5g04030	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	HX10P01r_at	HX10P01r	-	-	4e+0	At3g07640	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.93	Contig16152_at	Contig16152	-	-	2e+0	At1g22750	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.93	Contig17284_at	Contig17284	-	-	6e-2	At3g14650	CYP72A11	O.I.	H.G.	S.X.
0.50	66.9	0.93	HW01N23u_x_at	HW01N23u	-	-	2e-1	At4g15830	binding	O.I.	H.G.	S.X.
0.50	66.9	0.93	HS06I24u_at	HS06I24u	-	-	7e-5	At4g18570	proline-rich family protein	O.I.	H.G.	S.X.
0.50	66.9	0.93	HVSMEb0014E01r2_s_at	HVSMEb0014E01r2	-	-	1e+1	At5g16950	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.93	Contig24293_at	Contig24293	-	-	4e+0	At2g27285	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig21971_at	Contig21971	-	-	8e-1	At1g17830	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.94	HVSMEh0081G23r2_at	HVSMEh0081G23r2	-	-	1e+1	Atmg00820	-	O.I.	H.G.	S.X.
0.50	66.9	0.94	HVSMEk0006D16r2_x_at	HVSMEk0006D16r2	-	-	5e+0	At1g52690	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig24402_at	Contig24402	-	-	5e+0	Atcg00270	-	O.I.	H.G.	S.X.
0.50	66.9	0.94	EBem08_SQ002_N23_x_at	EBem08_SQ002_N23	-	-	5e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig2362_s_at	Contig2362	-	-	6e-15	At1g26355	SP1L1 (SPIRAL1-LIKE1)	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig24567_at	Contig24567	-	-	1e+0	At2g10557	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	HV05G21u_x_at	HV05G21u	-	-	1e+1	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig17471_at	Contig17471	-	-	7e-1	At1g76820	GTP binding / GTPase	O.I.	H.G.	S.X.
0.50	66.9	0.95	EBro08_SQ003_C14_at	EBro08_SQ003_C14	-	-	3e+0	At5g56880	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	EBem05_SQ001_C10_at	EBem05_SQ001_C10	-	-	5e+0	At3g60200	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	HU05B08u_at	HU05B08u	-	-	3e+0	At1g58007	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	HVSMEm0021I24r2_at	HVSMEm0021I24r2	-	-	3e+0	At1g68650	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	HT11K17u_at	HT11K17u	-	-	2e-1	At1g24590	DRNL (DORNROSCHEN-LIKE)	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig13086_s_at	Contig13086	-	-	8e+0	At4g33040	glutaredoxin family protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	rbaal31o11_x_at	rbaal31o11	-	-	5e+0	At4g31050	lipoyltransferase (LIP2p)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.9 99.5 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
4.6 96.8 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM261058 Xantha b-12 Cotrol rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261056 Xantha b-12 Cotrol rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0 96.0 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9 95.8 GSM261057 Xantha b-12 Cotrol rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.9	99.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.6	96.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	EBro08_SQ010_D12_at
Gene name
Homology with Arabidopsis	Similar to At5g03550: - (HF=2e-1)
Module size	6 genes
NF	0.42
%ile	57.7

Co-expression analysis

Gene ID EBro08_SQ010_D12_at Gene name Homology with ArabidopsisSimilar to At5g03550: - (HF=2e-1) Module size 6 genes NF 0.42 %ile 57.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID EBro08_SQ010_D12_at

Gene name
Homology with Arabidopsis Similar to At5g03550: - (HF=2e-1)

Module size 6 genes

NF 0.42

%ile 57.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays