Co-expression analysis

Gene ID EBro08_SQ010_D12_at
Gene name
Homology with ArabidopsisSimilar to At5g03550: - (HF=2e-1)
Module size 6 genes
NF 0.42
%ile 57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93EBro08_SQ010_D12_atEBro08_SQ010_D12--2e-1At5g03550-O.I.H.G.S.X.
0.5066.90.97Contig25667_x_atContig25667--7e-1At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.5066.90.97HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.4053.10.97EBro08_SQ001_H04_atEBro08_SQ001_H04--1e+1At5g23027unknown proteinO.I.H.G.S.X.
0.3342.60.97EBro02_SQ008_P15_atEBro02_SQ008_P15--1e+1At5g43211unknown proteinO.I.H.G.S.X.
0.1311.60.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.999.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
4.696.8GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM261058Xantha b-12 Cotrol rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM261056Xantha b-12 Cotrol rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.096.0GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM261057Xantha b-12 Cotrol rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.49992.2.S1_at, orthologous to the query gene, EBro08_SQ010_D12_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.49992.2.S1_atAt5g03550--8e-1At3g17080self-incompatibility protein-relatedO.I.H.G.S.X.
0.0910.4Ta.3083.2.A1_atAt5g03550--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.056.7Ta.14479.3.S1_x_atAt5g03550--7e-18At2g05830eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.012.4Ta.28106.2.S1_atAt5g03550--3e-1At4g33380unknown proteinO.I.H.G.S.X.
0.012.4TaAffx.80013.1.S1_atAt5g03550--1e+0At4g18335unknown proteinO.I.H.G.S.X.
0.000.7TaAffx.60882.1.S1_atAt5g03550--4e+0At1g63206-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage