Co-expression analysis

Gene ID	EBro08_SQ010_D12_at
Gene name
Homology with Arabidopsis	Similar to At5g03550: - (HF=2e-1)
Module size	6 genes
NF	0.42
%ile	57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	EBro08_SQ010_D12_at	EBro08_SQ010_D12	-	-	2e-1	At5g03550	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.9	99.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.6	96.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL12Contig3_at, orthologous to the query gene, EBro08_SQ010_D12_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	PsAffx.CL12Contig3_at	At5g03550	-	-	6e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.83	92.5	PsAffx.CL87Contig2_s_at	At5g03550	-	-	1e+0	At1g60010	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	91.5	PsAffx.CL176Contig1_s_at	At5g03550	-	-	4e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.CL57Contig2_s_at	At5g03550	-	-	3e-4	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.CL188Contig1_at	At5g03550	-	-	6e+0	At5g13100	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.CL57Contig1_at	At5g03550	-	-	6e-4	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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