Co-expression analysis

Gene ID EBro08_SQ010_D12_at
Gene name
Homology with ArabidopsisSimilar to At5g03550: - (HF=2e-1)
Module size 6 genes
NF 0.42
%ile 57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93EBro08_SQ010_D12_atEBro08_SQ010_D12--2e-1At5g03550-O.I.H.G.S.X.
0.5066.90.97Contig25667_x_atContig25667--7e-1At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.5066.90.97HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.4053.10.97EBro08_SQ001_H04_atEBro08_SQ001_H04--1e+1At5g23027unknown proteinO.I.H.G.S.X.
0.3342.60.97EBro02_SQ008_P15_atEBro02_SQ008_P15--1e+1At5g43211unknown proteinO.I.H.G.S.X.
0.1311.60.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.999.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
4.696.8GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM261058Xantha b-12 Cotrol rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM261056Xantha b-12 Cotrol rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.096.0GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM261057Xantha b-12 Cotrol rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g03550, orthologous to the query gene, EBro08_SQ010_D12_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.9998.1At5g03550831790-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.2At2g26420817182PIP5K3 (1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3)Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth.O.I.H.G.S.X.
0.4761.2At2g05180815066CYP705A6member of CYP705AO.I.H.G.S.X.
0.4457.2At1g15050838070IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34)Belongs to auxin inducible gene family.O.I.H.G.S.X.
0.4355.3At1g02570839485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.9At1g06810837192unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.9At3g59120825081DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.3948.4At5g568303771525transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.7At5g60320836154lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.3745.0At5g54950835586aconitate hydratase-related / citrate hydro-lyase-related / aconitase-relatedF:molecular_function unknown;P:metabolic process;C:cellular_component unknown;MPOBO.I.H.G.S.X.
0.3745.0At1g64210842726leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVAO.I.H.G.S.X.
0.3643.6At3g578203769732-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.6At3g45110823647unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3643.6At3g24850822083DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.3643.6At4g18090827534unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPO.I.H.G.S.X.
0.3541.6At3g55780824744glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.H.G.S.X.
0.3439.8At2g15670816060-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.8At5g40100834007disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:plasma membrane, chloroplast envelope;PMBOFAVO.I.H.G.S.X.
0.3338.1At4g11590826764F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3235.7At2g26940817235zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFO.I.H.G.S.X.
0.3235.7At2g23100816842DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVAO.I.H.G.S.X.
0.3235.7At3g15250820756unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVO.I.H.G.S.X.
0.3032.1At3g13228820519zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVO.I.H.G.S.X.
0.3032.1At5g45120834548aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOO.I.H.G.S.X.
0.3032.1At5g15060831358-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2830.3At2g37740818351ZFP10 (ZINC-FINGER PROTEIN 10)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOFO.I.H.G.S.X.
0.2726.2At5g37910833770seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOFO.I.H.G.S.X.
0.2726.2At3g49830824145DNA helicase-relatedF:DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:chloroplast;MFOBPAO.I.H.G.S.X.
0.2624.4At3g58280824997-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.2522.6At1g11740837718ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOFBAVO.I.H.G.S.X.
0.2522.6At1g475203767382transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.7At2g20080816527unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.2319.3At2g22750816805basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.H.G.S.X.
0.2319.3At4g19190827658zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2217.5At1g55790842028ATP binding / nucleotide binding / phenylalanine-tRNA ligaseF:phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:cytoplasm;PFMOBO.I.H.G.S.X.
0.2217.5At1g26360839178MES13 (METHYL ESTERASE 13)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.H.G.S.X.
0.2014.4At1g01410837547APUM22 (Arabidopsis Pumilio 22)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.1912.7At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1811.4At3g18460821375unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.1811.4At5g50970835170WD-40 repeat family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPO.I.H.G.S.X.
0.1710.2At4g26380828744DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.1710.2At2g43450818946unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.2At5g49750835038leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVO.I.H.G.S.X.
0.157.8At3g15890820832protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.135.8At4g35120829664kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPVBOFAO.I.H.G.S.X.
0.124.9At3g49820824144unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.124.9At3g13682820577LDL2 (LSD1-LIKE2)Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.O.I.H.G.S.X.
0.114.1At4g28010828915pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.092.8At2g28460817394protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;POMO.I.H.G.S.X.
0.092.8At2g02300814761AtPP2-B5 (Phloem protein 2-B5)F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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