Co-expression analysis

Gene ID EBro08_SQ007_I17_at
Gene name
Homology with ArabidopsisSimilar to At2g31410: unknown protein (HF=3e+0)
Module size 15 genes
NF 0.29
%ile 38.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.76EBro08_SQ007_I17_atEBro08_SQ007_I17--3e+0At2g31410unknown proteinO.I.H.G.S.X.
0.5066.90.89HVSMEg0005F20r2_atHVSMEg0005F20r2--8e-1At2g01175unknown proteinO.I.H.G.S.X.
0.4356.40.89Contig8948_atContig8948--8e-7At5g20910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4053.10.90Contig17670_atContig17670--3e+0At5g48420unknown proteinO.I.H.G.S.X.
0.4053.10.90Contig14116_atContig14116--6e-1At2g15680calmodulin-related protein, putativeO.I.H.G.S.X.
0.3545.10.90Contig24329_atContig24329--4e+0At3g53410zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3342.60.90HVSMEm0004M03r2_atHVSMEm0004M03r2--8e+0At4g29035-O.I.H.G.S.X.
0.3240.30.90Contig14014_atContig14014--1e-2At3g29070protein transmembrane transporterO.I.H.G.S.X.
0.3037.00.88Contig22210_atContig22210--1e+0At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.2935.50.87Contig17650_atContig17650--6e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.2122.60.89Contig8995_atContig8995--3e-19At3g08730PK1 (PROTEIN-SERINE KINASE 1)O.I.H.G.S.X.
0.2122.60.92Contig24850_atContig24850--5e+0At2g12462unknown proteinO.I.H.G.S.X.
0.1919.60.89Contig1037_atContig1037--2e-11Atcg00720-O.I.H.G.S.X.
0.108.40.88Contig12876_atContig12876--3e+0At5g48710ubiquitin-relatedO.I.H.G.S.X.
0.054.10.86Contig9436_atContig9436--3e-2At5g53720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.997.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.897.0GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.796.9GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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