Co-expression analysis

Gene ID	EBro08_SQ007_H23_at
Gene name
Homology with Arabidopsis	Similar to At1g02450: NIMIN1 (NIM1-INTERACTING 1) (HF=8e-1)
Module size	30 genes
NF	0.67
%ile	89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.95	EBro08_SQ007_H23_at	EBro08_SQ007_H23	-	-	8e-1	At1g02450	NIMIN1 (NIM1-INTERACTING 1)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.96	Contig19421_at	Contig19421	-	-	3e-1	At1g18380	-	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	HVSMEg0010M12r2_at	HVSMEg0010M12r2	-	-	2e-8	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.96	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.95	Contig22936_at	Contig22936	-	-	1e-1	At5g47180	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.96	Contig23039_at	Contig23039	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.95	HVSMEm0018O23r2_at	HVSMEm0018O23r2	-	-	1e-3	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.96	HVSMEl0006C17r2_x_at	HVSMEl0006C17r2	-	-	1e+0	At4g32090	galactosyltransferase	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.96	Contig14886_at	Contig14886	-	-	1e+0	At3g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.96	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.96	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.95	Contig13086_s_at	Contig13086	-	-	8e+0	At4g33040	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.96	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.96	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.96	baal1j07_at	baal1j07	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.95	Contig25915_at	Contig25915	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	HVSMEf0019H01r2_at	HVSMEf0019H01r2	-	-	1e+1	At3g27460	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.96	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	rbags18m16_at	rbags18m16	-	-	2e+0	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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