Co-expression analysis

Gene ID	EBro07_SQ002_B11_at
Gene name
Homology with Arabidopsis	Similar to At3g56380: ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17) (HF=3e+0)
Module size	8 genes
NF	0.55
%ile	76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.84	EBro07_SQ002_B11_at	EBro07_SQ002_B11	-	-	3e+0	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.89	Contig17953_at	Contig17953	-	-	2e+0	At3g47100	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig5490_at	Contig5490	-	-	3e-1	At3g14680	CYP72A14	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.87	Contig4445_at	Contig4445	-	-	3e-1	At2g32190	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.88	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.87	Contig18698_at	Contig18698	-	-	4e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	93.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5	91.9	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.5	91.9	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
2.4	91.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.3	90.9	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.3	90.9	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM160464	drought control rep1	GSE6990	Barley drought stress
2.2	90.3	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.2	90.3	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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