Co-expression analysis

Gene ID EBro05_SQ003_D01_s_at
Gene name
Homology with ArabidopsisSimilar to At5g21274: CAM6 (CALMODULIN 6) (HF=1e+1)
Module size 25 genes
NF 0.49
%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7086.00.93EBro05_SQ003_D01_s_atEBro05_SQ003_D01--1e+1At5g21274CAM6 (CALMODULIN 6)O.I.H.G.S.X.
0.7187.10.95HVSMEk0006G12r2_s_atHVSMEk0006G12r2--7e-1At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.6480.90.95rbaal1h20_s_atrbaal1h20--2e-2At5g53580aldo/keto reductase family proteinO.I.H.G.S.X.
0.6279.10.95Contig9132_atContig9132--9e-2At1g71750phosphoribosyltransferase family proteinO.I.H.G.S.X.
0.6077.30.95Contig5736_atContig5736--7e-30At3g11710ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)O.I.H.G.S.X.
0.5874.90.95Contig12544_atContig12544--2e+1At5g03100F-box family proteinO.I.H.G.S.X.
0.5874.90.95HVSMEa0003B04r2_s_atHVSMEa0003B04r2--3e+0At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.5774.90.95Contig6820_atContig6820--7e-12At4g13350NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE)O.I.H.G.S.X.
0.5268.30.94Contig12098_atContig12098--2e-6At1g16210unknown proteinO.I.H.G.S.X.
0.5167.50.96Contig2155_atContig2155--3e-9At2g20890PSB29O.I.H.G.S.X.
0.4963.70.96Contig9113_atContig9113--2e-26At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.4863.20.95Contig16514_atContig16514--1e+0At2g01590CRR3 (CHLORORESPIRATORY REDUCTION 3)O.I.H.G.S.X.
0.4661.00.94Contig9861_atContig9861--7e-1At5g35900LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)O.I.H.G.S.X.
0.4458.90.95Contig16354_atContig16354--2e+0At3g09700DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4458.90.95Contig13475_atContig13475--1e-17At5g22370QQT1 (QUATRE-QUART 1)O.I.H.G.S.X.
0.4356.40.95Contig15133_atContig15133--1e+0At2g22345-O.I.H.G.S.X.
0.4255.20.95Contig8253_atContig8253--2e-3At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.4255.20.95Contig8086_atContig8086--2e+0At5g21430DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4153.90.95Contig7246_atContig7246--1e-10At5g14260SET domain-containing proteinO.I.H.G.S.X.
0.4153.90.95Contig7625_atContig7625--4e-1At5g36659-O.I.H.G.S.X.
0.3950.50.95Contig7649_atContig7649--2e+0At1g52342unknown proteinO.I.H.G.S.X.
0.3950.50.95Contig4085_s_atContig4085--4e-4At2g37120DNA-binding S1FA family proteinO.I.H.G.S.X.
0.3950.50.95Contig13419_atContig13419--3e+0At3g58670unknown proteinO.I.H.G.S.X.
0.3545.10.95Contig12720_atContig12720--7e+0At5g38180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3138.60.94Contig7885_atContig7885--2e-16At1g66330senescence-associated family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.8GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM261034Dicktoo-chilling-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
2.692.3GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.591.9GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
2.390.9GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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