Co-expression analysis

Gene ID EBro04_SQ002_A10_at
Gene name
Homology with ArabidopsisSimilar to At5g40730: AGP24 (HF=4e+0)
Module size 6 genes
NF 0.46
%ile 63.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.91EBro04_SQ002_A10_atEBro04_SQ002_A10--4e+0At5g40730AGP24O.I.H.G.S.X.
0.4458.90.96rbags18m16_atrbags18m16--2e+0At2g35790unknown proteinO.I.H.G.S.X.
0.4356.40.96EBca01_SQ004_P03_x_atEBca01_SQ004_P03--2e+0At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.
0.3647.10.97Contig21533_atContig21533--2e+0At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.3037.00.96Contig23039_atContig23039--4e-2At2g45920U-box domain-containing proteinO.I.H.G.S.X.
0.2732.10.97HVSMEh0084N15r2_s_atHVSMEh0084N15r2--6e+0At1g48510cytochrome c oxidase assembly protein surfeit-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.799.5GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
10.699.2GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
9.299.0GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
6.998.3GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.698.2GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
6.097.9GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.897.8GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.597.6GSM431570pathogen isolates: Mock inoculated control - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.297.4GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.997.1GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage