Co-expression analysis

Gene ID	EBro04_SQ001_J04_at
Gene name
Homology with Arabidopsis	Similar to At4g12550: AIR1 (HF=3e+0)
Module size	8 genes
NF	0.61
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.90	EBro04_SQ001_J04_at	EBro04_SQ001_J04	-	-	3e+0	At4g12550	AIR1	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.93	Contig3783_s_at	Contig3783	-	-	4e-1	At2g30766	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	HA25J20r_at	HA25J20r	-	-	3e+0	At3g05741	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.90	EBro08_SQ004_A23_at	EBro08_SQ004_A23	-	-	4e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.91	Contig25357_at	Contig25357	-	-	4e-1	At3g59480	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	HVSMEi0007G06r2_s_at	HVSMEi0007G06r2	-	-	1e+1	At4g09830	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	EBro03_SQ006_J01_at	EBro03_SQ006_J01	-	-	1e+0	At5g17820	peroxidase 57 (PER57) (P57) (PRXR10)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.91	Contig15545_at	Contig15545	-	-	5e-1	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.9	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.0	98.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.0	97.9	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.9	97.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.1	97.3	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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