CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID EBro02_SQ008_P15_at

Gene name
Homology with Arabidopsis Similar to At5g43211: unknown protein (HF=1e+1)

Module size 6 genes

NF 0.60

%ile 82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 EBro02_SQ008_P15_at EBro02_SQ008_P15 - - 1e+1 At5g43211 unknown protein O.I. H.G. S.X.
0.63 80.3 0.97 HVSMEg0002G01r2_x_at HVSMEg0002G01r2 - - 6e+0 At5g39360 EDL2 (EID1-like 2) O.I. H.G. S.X.
0.56 74.3 0.97 V00087.1_at V00087.1 - - 3e-1 At5g43525 - O.I. H.G. S.X.
0.50 66.9 0.98 HS05N06r_at HS05N06r - - 9e-1 At1g79110 protein binding / zinc ion binding O.I. H.G. S.X.
0.43 56.4 0.97 HA31G21r_at HA31G21r - - 2e+0 At5g17190 unknown protein O.I. H.G. S.X.
0.42 55.2 0.97 Contig17900_at Contig17900 - - 6e+0 At4g05170 DNA binding / transcription factor O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.
0.63	80.3	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.
0.56	74.3	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.
0.50	66.9	0.98	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.43	56.4	0.97	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.
0.42	55.2	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	94.0	0.95	HW07N02u_at	HW07N02u	-	-	2e+0	At5g01510	-	O.I.	H.G.	S.X.
0.83	94.0	0.96	Contig21718_at	Contig21718	-	-	3e-1	At1g07080	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	O.I.	H.G.	S.X.
0.80	92.5	0.93	HX10P01r_at	HX10P01r	-	-	4e+0	At3g07640	unknown protein	O.I.	H.G.	S.X.
0.80	92.5	0.95	HVSMEb0011N20f_at	HVSMEb0011N20f	-	-	3e+0	At4g32030	unknown protein	O.I.	H.G.	S.X.
0.80	92.5	0.96	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.
0.77	90.8	0.96	HVSMEm0022H22r2_at	HVSMEm0022H22r2	-	-	6e-1	At2g33590	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.
0.73	88.7	0.93	Contig16152_at	Contig16152	-	-	2e+0	At1g22750	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.96	Contig17828_at	Contig17828	-	-	9e-2	At2g32885	-	O.I.	H.G.	S.X.
0.73	88.7	0.96	HM11C20r_at	HM11C20r	-	-	4e+0	At3g55890	yippee family protein	O.I.	H.G.	S.X.
0.73	88.7	0.96	Contig5979_at	Contig5979	-	-	4e-15	At5g20080	NADH-cytochrome b5 reductase, putative	O.I.	H.G.	S.X.
0.73	88.7	0.96	Contig13086_s_at	Contig13086	-	-	8e+0	At4g33040	glutaredoxin family protein	O.I.	H.G.	S.X.
0.71	87.1	0.92	Contig22644_at	Contig22644	-	-	9e-1	At5g27440	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.91	HV_CEb0011D15r2_s_at	HV_CEb0011D15r2	-	-	1e-6	At5g47870	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.93	HW08D08u_x_at	HW08D08u	-	-	2e+0	At2g24060	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.94	Contig15492_at	Contig15492	-	-	1e-1	At3g07600	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	rbaal4l02_at	rbaal4l02	-	-	6e-3	At5g09640	SCPL19	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig446_at	Contig446	-	-	1e-33	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	O.I.	H.G.	S.X.
0.67	84.7	0.96	HT11K17u_at	HT11K17u	-	-	2e-1	At1g24590	DRNL (DORNROSCHEN-LIKE)	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig19421_at	Contig19421	-	-	3e-1	At1g18380	-	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig25915_at	Contig25915	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.63	80.3	0.96	HVSMEa0012H02f2_at	HVSMEa0012H02f2	-	-	4e+0	At3g02555	unknown protein	O.I.	H.G.	S.X.
0.63	80.3	0.94	HU02F20u_at	HU02F20u	-	-	2e-5	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	O.I.	H.G.	S.X.
0.63	80.3	0.95	MitoContig18_at	MitoContig18	-	-	5e-174	Atmg00640	-	O.I.	H.G.	S.X.
0.61	78.7	0.94	baal31g17_at	baal31g17	-	-	9e-1	At3g61970	NGA2 (NGATHA2)	O.I.	H.G.	S.X.
0.61	78.7	0.94	Contig176_at	Contig176	-	-	1e-37	At1g09200	histone H3	O.I.	H.G.	S.X.
0.61	78.7	0.95	EBro08_SQ004_I03_at	EBro08_SQ004_I03	-	-	5e+0	At4g34750	auxin-responsive protein, putative / small auxin up RNA (SAUR_E)	O.I.	H.G.	S.X.
0.61	78.7	0.96	HT08O05u_at	HT08O05u	-	-	7e-1	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.
0.61	78.7	0.96	HC113H04_SK_at	HC113H04_SK	-	-	3e+0	At2g42410	ZFP11 (ZINC FINGER PROTEIN 11)	O.I.	H.G.	S.X.
0.61	78.7	0.96	HT11A16u_x_at	HT11A16u	-	-	2e+0	At1g64080	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.92	HVSMEi0013P16r2_at	HVSMEi0013P16r2	-	-	3e-1	At4g38310	galactosyl transferase GMA12/MNN10 family protein	O.I.	H.G.	S.X.
0.60	77.3	0.94	HS07O10u_at	HS07O10u	-	-	9e-1	At5g52120	AtPP2-A14 (Phloem protein 2-A14)	O.I.	H.G.	S.X.
0.60	77.3	0.94	HVSMEn0020M17r2_at	HVSMEn0020M17r2	-	-	8e-1	At3g15760	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.94	Contig24402_at	Contig24402	-	-	5e+0	Atcg00270	-	O.I.	H.G.	S.X.
0.60	77.3	0.95	EBma05_SQ003_B12_at	EBma05_SQ003_B12	-	-	8e+0	At1g31335	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.95	EBro08_SQ003_E14_at	EBro08_SQ003_E14	-	-	3e+0	At5g48515	-	O.I.	H.G.	S.X.
0.60	77.3	0.96	HVSMEa0002D20r2_s_at	HVSMEa0002D20r2	-	-	1e+0	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.
0.60	77.3	0.97	HY03E24u_at	HY03E24u	-	-	2e+0	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	O.I.	H.G.	S.X.
0.60	77.3	0.97	Contig26035_at	Contig26035	-	-	2e+0	At1g10600	-	O.I.	H.G.	S.X.
0.59	75.8	0.94	Contig17598_at	Contig17598	-	-	3e-1	At5g08050	-	O.I.	H.G.	S.X.
0.59	75.8	0.95	HVSMEl0020O03r2_at	HVSMEl0020O03r2	-	-	1e+0	At5g06410	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.59	75.8	0.95	HV_CEb0021G08r2_at	HV_CEb0021G08r2	-	-	2e-2	At4g04510	protein kinase family protein	O.I.	H.G.	S.X.
0.59	75.8	0.96	Contig18739_at	Contig18739	-	-	4e+0	At2g32960	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.
0.59	75.8	0.97	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.57	74.9	0.91	Contig20348_at	Contig20348	-	-	2e+0	At3g59845	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.
0.57	74.9	0.94	HB15J24r_at	HB15J24r	-	-	3e+0	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.
0.57	74.9	0.94	HA24O05r_at	HA24O05r	-	-	4e+0	At3g60370	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.57	74.9	0.95	Contig23542_at	Contig23542	-	-	7e-2	At4g31360	selenium binding	O.I.	H.G.	S.X.
0.57	74.9	0.96	Contig18499_at	Contig18499	-	-	1e+0	At5g28750	thylakoid assembly protein, putative	O.I.	H.G.	S.X.
0.56	74.3	0.91	HU10F14u_at	HU10F14u	-	-	1e+1	At5g04347	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.6 99.4 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.8 99.1 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
9.8 99.1 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
8.8 98.9 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
7.4 98.5 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.2 98.5 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
5.8 97.8 GSM440980 Stressed seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.2 97.4 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.2 97.4 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
5.1 97.3 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.6	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.8	99.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.8	98.9	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	EBro02_SQ008_P15_at
Gene name
Homology with Arabidopsis	Similar to At5g43211: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expression analysis

Gene ID EBro02_SQ008_P15_at Gene name Homology with ArabidopsisSimilar to At5g43211: unknown protein (HF=1e+1) Module size 6 genes NF 0.60 %ile 82.3

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID EBro02_SQ008_P15_at

Gene name
Homology with Arabidopsis Similar to At5g43211: unknown protein (HF=1e+1)

Module size 6 genes

NF 0.60

%ile 82.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays