Co-expression analysis

Gene ID	EBro02_SQ008_P15_at
Gene name
Homology with Arabidopsis	Similar to At5g43211: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.8	99.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.8	98.9	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1611451_at, orthologous to the query gene, EBro02_SQ008_P15_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	1611451_at	At5g43211	hypothetical protein LOC100256535	-	2e-5	At2g44640	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	1617675_at	At5g43211	hypothetical protein LOC100245692	-	3e-13	At5g24020	MIND	O.I.	H.G.	S.X.	Please select
0.29	37.7	1607315_at	At5g43211	-	-	4e+0	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1616672_at	At5g43211	hypothetical protein LOC100252527	-	2e-2	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1615289_at	At5g43211	hypothetical protein LOC100248755	-	1e+0	At3g45577	tRNA-intron endonuclease	O.I.	H.G.	S.X.	Please select
0.14	14.4	1618539_at	At5g43211	hypothetical protein LOC100267633	-	1e-2	At2g41950	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1616831_at	At5g43211	-	-	4e-1	At1g06950	TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1616874_at	At5g43211	-	-	2e-18	At5g58250	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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