Co-expression analysis

Gene ID	EBro02_SQ008_P15_at
Gene name
Homology with Arabidopsis	Similar to At5g43211: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.8	99.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.8	98.9	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.131916.8.S1_at, orthologous to the query gene, EBro02_SQ008_P15_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	TaAffx.131916.8.S1_at	At5g43211	-	-	1e+0	At3g52550	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.9542.3.S1_x_at	At5g43211	-	-	4e-3	At5g01810	CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.79549.1.S1_s_at	At5g43211	Protein serine/threonine kinase-like	-	1e+1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.4772.1.S1_at	At5g43211	-	-	2e+1	At5g39240	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.6555.3.S1_a_at	At5g43211	-	-	4e+0	At5g54790	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.1238.3.S1_a_at	At5g43211	-	-	3e-1	At1g25472	CPuORF54 (Conserved peptide upstream open reading frame 54)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.2937.3.S1_x_at	At5g43211	-	-	1e+0	At5g42330	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.107397.1.S1_at	At5g43211	-	-	1e+0	At5g43570	serine-type endopeptidase inhibitor	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.11110.1.S1_x_at	At5g43211	-	-	4e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.26470.1.S1_at	At5g43211	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.79010.1.S1_at	At5g43211	-	-	3e+0	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.107232.1.S1_at	At5g43211	-	-	1e+0	At5g22580	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.64474.2.S1_at	At5g43211	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.23844.1.S1_at	At5g43211	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.55766.1.S1_at	At5g43211	-	-	1e+0	At5g03040	iqd2 (IQ-domain 2)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.31791.1.S1_at	At5g43211	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.38637.2.S1_at	At5g43211	-	-	4e+0	At4g12470	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.23229.2.S1_a_at	At5g43211	-	-	4e+0	At2g40802	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.5445.2.S1_x_at	At5g43211	-	-	1e-6	At5g56170	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.23723.1.S1_at	At5g43211	-	-	2e+1	At5g09445	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.5736.3.S1_at	At5g43211	-	-	1e-61	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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