Co-expression analysis

Gene ID	EBro02_SQ008_P15_at
Gene name
Homology with Arabidopsis	Similar to At5g43211: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.8	99.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.8	98.9	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.76403.1.A1_at, orthologous to the query gene, EBro02_SQ008_P15_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	PtpAffx.76403.1.A1_at	At5g43211	hypothetical protein	-	3e+0	At4g19035	LCR7 (Low-molecular-weight cysteine-rich 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.154196.1.A1_at	At5g43211	hypothetical protein	-	2e-21	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.38086.1.A1_s_at	At5g43211	hypothetical protein	-	2e-1	At1g24120	ARL1 (ARG1-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.34708.3.S1_s_at	At5g43211	hypothetical protein	-	4e+0	At2g16620	protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.1311.1.A1_at	At5g43211	-	-	7e-1	At3g48220	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.50333.1.S1_s_at	At5g43211	hypothetical protein	-	7e-16	At2g38710	AMMECR1 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.149830.1.S1_at	At5g43211	hypothetical protein	-	2e-70	At1g08040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.63208.1.A1_at	At5g43211	hypothetical protein	-	3e-27	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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