Co-expression analysis

Gene ID EBro02_SQ008_P15_at
Gene name
Homology with ArabidopsisSimilar to At5g43211: unknown protein (HF=1e+1)
Module size 6 genes
NF 0.60
%ile 82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97EBro02_SQ008_P15_atEBro02_SQ008_P15--1e+1At5g43211unknown proteinO.I.H.G.S.X.
0.6380.30.97HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.5674.30.97V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.
0.5066.90.98HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.
0.4356.40.97HA31G21r_atHA31G21r--2e+0At5g17190unknown proteinO.I.H.G.S.X.
0.4255.20.97Contig17900_atContig17900--6e+0At4g05170DNA binding / transcription factorO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.699.4GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.899.1GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
9.899.1GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.898.9GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.498.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.297.4GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.297.4GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.197.3GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.17595.1.S1_at, orthologous to the query gene, EBro02_SQ008_P15_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6HgAffx.17595.1.S1_atAt5g43211--1e+1At5g67060HEC1 (HECATE 1)O.I.H.G.S.X.
0.5576.3PsAffx.psHB004xH08f_atAt5g43211--5e+0At3g61840unknown proteinO.I.H.G.S.X.
0.5576.3HgAffx.19033.4.A1_atAt5g43211--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.5071.7HgAffx.19033.4.A1_x_atAt5g43211--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.1619.7HgAffx.17965.1.S1_atAt5g43211--2e+0At2g23340AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.001.4Gma.2196.1.S1_x_atAt5g43211calmodulin-6e-87At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage