Co-expression analysis

Gene ID	EBro02_SQ007_J14_at
Gene name
Homology with Arabidopsis	Similar to At2g22155: - (HF=2e+0)
Module size	8 genes
NF	0.51
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.85	EBro02_SQ007_J14_at	EBro02_SQ007_J14	-	-	2e+0	At2g22155	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.86	HV_CEb0010F15r2_at	HV_CEb0010F15r2	-	-	5e-6	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig22222_at	Contig22222	-	-	1e+0	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.88	Contig1518_at	Contig1518	-	-	3e-2	At3g05950	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	HY02O18u_s_at	HY02O18u	-	-	1e+1	At5g59870	HTA6	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig7492_s_at	Contig7492	-	-	4e-16	At3g14790	RHM3 (RHAMNOSE BIOSYNTHESIS 3)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.87	Contig12916_s_at	Contig12916	-	-	1e-2	At3g11180	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.4	99.5	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
11.8	99.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
10.0	99.1	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.1	98.4	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.4	97.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.4	97.5	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
5.3	97.4	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
5.2	97.4	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1	97.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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