Co-expression analysis

Gene ID	EBpi03_SQ003_K07_at
Gene name
Homology with Arabidopsis	Similar to At2g09388: unknown protein (HF=2e-1)
Module size	9 genes
NF	0.39
%ile	53.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.79	EBpi03_SQ003_K07_at	EBpi03_SQ003_K07	-	-	2e-1	At2g09388	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig21916_at	Contig21916	-	-	4e-1	At2g42760	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.83	Contig23768_at	Contig23768	-	-	1e+0	At1g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.86	HU14G08u_s_at	HU14G08u	-	-	3e-1	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.84	Contig19065_at	Contig19065	-	-	1e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.87	Contig8818_at	Contig8818	-	-	2e+0	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	Contig18089_at	Contig18089	-	-	5e+0	At4g31330	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.87	Contig13653_at	Contig13653	-	-	4e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.87	HZ65E19r_at	HZ65E19r	-	-	2e+1	At5g40530	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.0	96.0	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.0	96.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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