Co-expression analysis

Gene ID	EBpi03_SQ003_I06_at
Gene name
Homology with Arabidopsis	Similar to At5g16090: - (HF=8e-1)
Module size	7 genes
NF	0.33
%ile	43.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.90	EBpi03_SQ003_I06_at	EBpi03_SQ003_I06	-	-	8e-1	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.89	Contig12167_at	Contig12167	-	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	Contig7448_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig2360_at	Contig2360	-	-	2e-27	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.90	HD12A16r_at	HD12A16r	-	-	7e-2	At4g18190	ATPUP6	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.91	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.91	Contig4899_s_at	Contig4899	-	-	2e-2	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
12.1	99.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
7.9	98.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
6.5	98.2	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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