Co-expression analysis

Gene ID EBpi03_SQ003_A03_s_at
Gene name
Homology with ArabidopsisSimilar to At2g33370: 60S ribosomal protein L23 (RPL23B) (HF=6e-4)
Module size 13 genes
NF 0.65
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8995.40.97EBpi03_SQ003_A03_s_atEBpi03_SQ003_A03--6e-4At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.7991.40.97Contig3972_atContig3972--7e-7At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.7991.40.97Contig6681_atContig6681--4e+0At5g63460SAP domain-containing proteinO.I.H.G.S.X.
0.7891.20.98Contig11081_atContig11081--1e-26At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)O.I.H.G.S.X.
0.7489.10.98Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.
0.7187.10.98Contig10380_x_atContig10380--4e-1At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.7086.00.98EBem09_SQ001_B21_s_atEBem09_SQ001_B21--2e+0At5g36920unknown proteinO.I.H.G.S.X.
0.6480.90.98HA12A08u_s_atHA12A08u--5e-2At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.5874.90.98rbags18e07_s_atrbags18e07--4e-1At3g58170BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)O.I.H.G.S.X.
0.5470.30.98Contig25214_atContig25214--1e+0At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.4863.20.98Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.4559.30.97HU14M19u_s_atHU14M19u--3e+0At1g7406060S ribosomal protein L6 (RPL6B)O.I.H.G.S.X.
0.3545.10.97Contig16972_atContig16972--5e-10At5g64813LIP1 (Light Insensitive Period1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.098.7GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
5.497.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.893.1GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
2.692.3GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
2.591.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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