Co-expression analysis

Gene ID	EBpi01_SQ004_D06_s_at
Gene name
Homology with Arabidopsis	Similar to At1g54870: binding / catalytic/ oxidoreductase (HF=6e+0)
Module size	29 genes
NF	0.21
%ile	25.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.89	EBpi01_SQ004_D06_s_at	EBpi01_SQ004_D06	-	-	6e+0	At1g54870	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	Contig4372_s_at	Contig4372	-	-	9e-1	At1g76470	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig5856_at	Contig5856	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig6733_at	Contig6733	-	-	6e-2	At3g44720	ADT4 (arogenate dehydratase 4)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	HV02E01u_at	HV02E01u	-	-	8e-1	At5g35069	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	HVSMEl0011L15f2_s_at	HVSMEl0011L15f2	-	-	4e-2	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	HY08D02u_s_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	HVSMEl0005F20r2_at	HVSMEl0005F20r2	-	-	2e+0	At5g32440	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.90	HU07L18r_s_at	HU07L18r	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig2700_x_at	Contig2700	-	-	1e+0	At1g23890	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig23565_at	Contig23565	-	-	2e+0	At4g14819	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	HVSMEb0001K06r2_s_at	HVSMEb0001K06r2	-	-	8e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig4143_at	Contig4143	-	-	5e-1	At3g06778	heat shock protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig2507_at	Contig2507	-	-	2e-51	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig2985_s_at	Contig2985	-	-	9e-43	At5g13630	GUN5 (GENOMES UNCOUPLED 5)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig471_s_at	Contig471	-	-	3e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	rbaal17n22_s_at	rbaal17n22	-	-	6e-1	At2g35660	CTF2A	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	HM02P13u_s_at	HM02P13u	-	-	6e+0	At5g47980	transferase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig376_at	Contig376	-	-	5e+0	At1g28135	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig10502_at	Contig10502	-	-	8e-4	At4g31140	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig682_s_at	Contig682	-	-	9e-13	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig4268_s_at	Contig4268	-	-	3e-49	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig3920_at	Contig3920	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig9663_s_at	Contig9663	-	-	9e-1	At2g43390	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.92	Contig19346_at	Contig19346	-	-	1e+0	At5g19870	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	HVSMEm0004D09r2_at	HVSMEm0004D09r2	-	-	3e-1	At2g20500	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.1	97.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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