Co-expression analysis

Gene ID	EBpi01_SQ002_L02_x_at
Gene name
Homology with Arabidopsis	Similar to At5g47640: NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) (HF=3e+0)
Module size	6 genes
NF	0.57
%ile	79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	EBpi01_SQ002_L02_x_at	EBpi01_SQ002_L02	-	-	3e+0	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.89	Contig19089_at	Contig19089	-	-	6e-13	At5g48380	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	HD12A16r_at	HD12A16r	-	-	7e-2	At4g18190	ATPUP6	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	EBpi01_SQ002_L02_at	EBpi01_SQ002_L02	-	-	3e+0	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	Contig17611_at	Contig17611	-	-	2e+0	At3g03950	protein binding	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.88	Contig7448_at	Contig7448	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.4	99.4	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.3	98.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.8	98.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.8	98.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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