Co-expression analysis

Gene ID	EBpi01_SQ001_A05_s_at
Gene name
Homology with Arabidopsis	Similar to At2g31005: - (HF=3e+0)
Module size	6 genes
NF	0.71
%ile	92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.87	EBpi01_SQ001_A05_s_at	EBpi01_SQ001_A05	-	-	3e+0	At2g31005	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.85	Contig14553_at	Contig14553	-	-	2e+0	At2g27790	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.81	HV_CEb0012I09r2_x_at	HV_CEb0012I09r2	-	-	5e-1	At1g72890	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.86	Contig5659_at	Contig5659	-	-	1e+0	At1g34290	AtRLP5 (Receptor Like Protein 5)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.90	Contig13383_at	Contig13383	-	-	1e-8	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	Contig10688_at	Contig10688	-	-	8e+0	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.7	98.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1	96.2	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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