Co-expression analysis

Gene ID	EBma04_SQ003_K13_s_at
Gene name
Homology with Arabidopsis	Similar to At3g60520: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.60
%ile	82.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.96	EBma04_SQ003_K13_s_at	EBma04_SQ003_K13	-	-	2e+0	At3g60520	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig3563_at	Contig3563	-	-	2e+0	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig5417_at	Contig5417	-	-	4e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.97	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.6	92.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
2.4	91.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.4	91.4	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.3	90.9	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.3	90.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.2	90.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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