Co-expression analysis

Gene ID EBma03_SQ001_K06_x_at
Gene name
Homology with ArabidopsisSimilar to At3g44110: ATJ3 (HF=8e-17)
Module size 6 genes
NF 0.01
%ile 1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.87EBma03_SQ001_K06_x_atEBma03_SQ001_K06--8e-17At3g44110ATJ3O.I.H.G.S.X.
0.5066.90.89Contig6321_atContig6321--4e-11At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2427.20.88HF08O15r_atHF08O15r--9e+0At4g23090unknown proteinO.I.H.G.S.X.
0.1716.90.88HS07N11u_atHS07N11u--4e+0At5g51451unknown proteinO.I.H.G.S.X.
0.021.80.89Contig6106_atContig6106--1e-2At1g55680WD-40 repeat family proteinO.I.H.G.S.X.
-0.20.87HV_CEa0014J08r2_atHV_CEa0014J08r2--4e+0At5g49050-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.5GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
6.798.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.497.5GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.097.2GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.997.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.997.1GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.196.2GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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