Co-expression analysis

Gene ID	EBem09_SQ005_B14_s_at
Gene name
Homology with Arabidopsis	Similar to At2g38830: tumor susceptibility protein-related (HF=5e-1)
Module size	31 genes
NF	0.53
%ile	74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.4	0.95	EBem09_SQ005_B14_s_at	EBem09_SQ005_B14	-	-	5e-1	At2g38830	tumor susceptibility protein-related	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.96	Contig3541_s_at	Contig3541	-	-	2e-5	At2g36390	SBE2.1 (starch branching enzyme 2.1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig19629_at	Contig19629	-	-	1e-26	At1g80900	magnesium transporter CorA-like family protein (MGT1) (MRS2)	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.95	HVSMEb0010L13r2_at	HVSMEb0010L13r2	-	-	1e+0	At5g19970	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.95	HS07P13u_s_at	HS07P13u	-	-	5e-5	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	HI05M04r_s_at	HI05M04r	-	-	1e-23	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig15613_at	Contig15613	-	-	7e-16	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	HA03D07u_s_at	HA03D07u	-	-	1e-1	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.97	Contig10380_x_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig10700_at	Contig10700	-	-	2e+0	At4g15990	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	EBem10_SQ004_B20_s_at	EBem10_SQ004_B20	-	-	5e+0	At4g30290	XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	HU14M19u_s_at	HU14M19u	-	-	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig18076_at	Contig18076	-	-	2e+0	At1g15840	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig2975_s_at	Contig2975	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	HT06A08u_s_at	HT06A08u	-	-	8e-4	At1g26910	60S ribosomal protein L10 (RPL10B)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig25214_at	Contig25214	-	-	1e+0	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	HM05O08r_s_at	HM05O08r	-	-	5e-15	At4g39200	40S ribosomal protein S25 (RPS25E)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.97	Contig8701_at	Contig8701	-	-	3e-1	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.97	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	HY02N18u_s_at	HY02N18u	-	-	8e+0	Atmg01050	-	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig13642_at	Contig13642	-	-	9e-1	At2g18840	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.97	Contig19387_at	Contig19387	-	-	2e-1	At3g30580	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig5972_at	Contig5972	-	-	1e-24	At1g80460	NHO1 (nonhost resistance to P. s. phaseolicola 1)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.97	Contig26100_at	Contig26100	-	-	2e+0	At1g53460	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig3963_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig8241_at	Contig8241	-	-	1e+0	At4g19390	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	rbasd18a22_s_at	rbasd18a22	-	-	3e-3	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.98	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig26480_at	Contig26480	-	-	2e+0	At1g62070	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.97	Contig23732_at	Contig23732	-	-	6e-1	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.5	91.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.4	91.4	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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